Gene Gene information from NCBI Gene database.
Entrez ID 8216
Gene name Leucine zipper like post translational regulator 1
Gene symbol LZTR1
Synonyms (NCBI Gene)
BTBD29LZTR-1NS10NS2SWNTS2
Chromosome 22
Chromosome location 22q11.21|22q11.1-q11.2
Summary This gene encodes a member of the BTB-kelch superfamily. Initially described as a putative transcriptional regulator based on weak homology to members of the basic leucine zipper-like family, the encoded protein subsequently has been shown to localize exc
SNPs SNP information provided by dbSNP.
58
SNP ID Visualize variation Clinical significance Consequence
rs140874089 G>A,C Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs145594158 G>A Likely-pathogenic Splice donor variant
rs148677674 C>A,T Likely-pathogenic Coding sequence variant, missense variant
rs149850248 C>G,T Likely-pathogenic Coding sequence variant, stop gained, missense variant
rs150419186 C>A,G,T Pathogenic Coding sequence variant, synonymous variant, stop gained, missense variant
miRNA miRNA information provided by mirtarbase database.
143
miRTarBase ID miRNA Experiments Reference
MIRT046517 hsa-miR-15b-5p CLASH 23622248
MIRT046517 hsa-miR-15b-5p CLASH 23622248
MIRT037967 hsa-miR-505-5p CLASH 23622248
MIRT650834 hsa-miR-6736-3p HITS-CLIP 23824327
MIRT650833 hsa-miR-4267 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 19060904, 29892012, 32296183, 35512704
GO:0005768 Component Endosome IEA
GO:0005794 Component Golgi apparatus IBA
GO:0005794 Component Golgi apparatus IDA 16356934
GO:0005794 Component Golgi apparatus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600574 6742 ENSG00000099949
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N653
Protein name Leucine-zipper-like transcriptional regulator 1 (LZTR-1)
Protein function Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex that mediates ubiquitination of Ras (K-Ras/KRAS, N-Ras/NRAS and H-Ras/HRAS) (PubMed:30442762, PubMed:30442766, PubMed:30481304). Is a negative regulator of R
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13418 Kelch_4 67 116 Repeat
PF07646 Kelch_2 117 166 Kelch motif Repeat
PF01344 Kelch_1 227 270 Kelch motif Repeat
PF01344 Kelch_1 283 328 Kelch motif Repeat
PF00651 BTB 433 573 BTB/POZ domain Domain
PF00651 BTB 656 767 BTB/POZ domain Domain
Sequence
MAGPGSTGGQIGAAALAGGARSKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPC
DEFVGARRSKHTVVAYKDAIYVFGGDNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYH
HSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWK
IEGRLPVARSAHGA
TVYSDKLWIFAGYDGNARLNDMWTIGLQDRELTCWEEVAQSGEIPPSCCNFPVAVCRDKM
FVFSGQSGAKITNNLFQFEFKDKTWTRIPT
EHLLRGSPPPPQRRYGHTMVAFDRHLYVFG
GAADNTLPNELHCYDVDFQTWEVVQPSS
DSEVGGAEVPERACASEEVPTLTYEERVGFKK
SRDVFGLDFGTTSAKQPTQPASELPSGRLFHAAAVISDAMYIFGGTVDNNIRSGEMYRFQ
FSCYPKCTLHEDYGRLWESRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKITQARER
LAQKLEQEAAPVPREAPGVAAGGARPPLLHVAIREAEARPFEVLMQFLYTDKIKYPRKGH
VEDVLLIMDVYKLALSFQLCRLEQLCRQYIEAS
VDLQNVLVVCESAARLQLSQLKEHCLN
FVVKESHFNQVIMMKEFERLSSPLIVEIVRRKQQPPPRTPLDQPVDIGTSLIQDMKAYLE
GAGAEFCDITLLLDGHPRPAHKAILAARSSYFEAMFRSFMPEDGQVNISIGEMVPSRQAF
ESMLRYIYYGEVNMPPEDSLYLFAAPYYYGFYNNRLQAYCKQNLEMN
VTVQNVLQILEAA
DKTQALDMKRHCLHIIVHQFTKVSKLPTLRSLSQQLLLDIIDSLASHISDKQCAELGADI
Sequence length 840
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
62
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autism spectrum disorder Likely pathogenic; Pathogenic rs780267761 RCV001291506
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cardiovascular phenotype Pathogenic; Likely pathogenic rs751123751, rs774779041, rs1924832357, rs1231204217, rs761241914, rs1450044732, rs1381717741, rs766446110, rs1924258572, rs587777177, rs1924497235, rs767445373, rs990151749, rs1390034681, rs2147969560
View all (304 more)
RCV005652613
RCV002322266
RCV004561084
RCV003164733
RCV002432059
View all (354 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental disorder Likely pathogenic; Pathogenic rs587777176 RCV003126498
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Emery-Dreifuss muscular dystrophy Pathogenic rs2147962064 RCV004527095
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity; Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bladder exstrophy Uncertain significance; Likely benign ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abnormal dermatoglyphic pattern Abnormal dermatoglyphic pattern HPO_DG
★☆☆☆☆
Found in Text Mining only
Acoustic Neuroma Acoustic Neuroma BEFREE 25480913, 26848914, 27856782, 28295212, 28737257, 28759666, 30325044
★☆☆☆☆
Found in Text Mining only
Adrenocortical Carcinoma Adrenocortical carcinoma Pubtator 36304963 Associate
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 30442762
★☆☆☆☆
Found in Text Mining only
Aortic coarctation Aortic Coarctation HPO_DG
★☆☆☆☆
Found in Text Mining only
Asthma Asthma Pubtator 24992002 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma CLINVAR_DG 29469822
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma BEFREE 30664951
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma Pubtator 30664951 Associate
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect BEFREE 30368668
★☆☆☆☆
Found in Text Mining only