Gene Gene information from NCBI Gene database.
Entrez ID 8048
Gene name Cysteine and glycine rich protein 3
Gene symbol CSRP3
Synonyms (NCBI Gene)
CLPCMD1MCMH12CRP3LMO4MLP
Chromosome 11
Chromosome location 11p15.1
Summary This gene encodes a member of the CSRP family of LIM domain proteins, which may be involved in regulatory processes important for development and cellular differentiation. The LIM/double zinc-finger motif found in this protein is found in a group of prote
SNPs SNP information provided by dbSNP.
19
SNP ID Visualize variation Clinical significance Consequence
rs13451 C>G,T Likely-benign, benign, likely-pathogenic Synonymous variant, coding sequence variant
rs104894204 A>C Pathogenic Missense variant, intron variant, coding sequence variant
rs104894205 A>G Uncertain-significance, likely-pathogenic, pathogenic-likely-pathogenic Missense variant, intron variant, coding sequence variant
rs137852764 T>C Uncertain-significance, pathogenic Coding sequence variant, intron variant, missense variant
rs137852765 T>G Uncertain-significance, pathogenic Coding sequence variant, intron variant, missense variant
miRNA miRNA information provided by mirtarbase database.
51
miRTarBase ID miRNA Experiments Reference
MIRT637238 hsa-miR-6875-3p HITS-CLIP 23824327
MIRT637237 hsa-miR-4659a-3p HITS-CLIP 23824327
MIRT637236 hsa-miR-4659b-3p HITS-CLIP 23824327
MIRT637238 hsa-miR-6875-3p HITS-CLIP 23824327
MIRT637237 hsa-miR-4659a-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
59
GO ID Ontology Definition Evidence Reference
GO:0002026 Process Regulation of the force of heart contraction IEA
GO:0002026 Process Regulation of the force of heart contraction ISS
GO:0003300 Process Cardiac muscle hypertrophy IMP 12507422
GO:0003779 Function Actin binding IEA
GO:0005515 Function Protein binding IPI 12127981, 15205937, 15582318, 24860983, 32814053
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600824 2472 ENSG00000129170
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P50461
Protein name Cysteine and glycine-rich protein 3 (Cardiac LIM protein) (Cysteine-rich protein 3) (CRP3) (LIM domain protein, cardiac) (Muscle LIM protein)
Protein function Positive regulator of myogenesis. Acts as a cofactor for myogenic bHLH transcription factors such as MYOD1, and probably MYOG and MYF6. Enhances the DNA-binding activity of the MYOD1:TCF3 isoform E47 complex and may promote formation of a functi
PDB 2O10 , 2O13
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00412 LIM 10 66 LIM domain Domain
PF00412 LIM 120 176 LIM domain Domain
Tissue specificity TISSUE SPECIFICITY: Cardiac and slow-twitch skeletal muscles. Isoform 2 is expressed in striated muscle. Isoform 2 is specifically expressed at higher levels in patients with neuromuscular diseases, such as limb-girdle muscular dystrophy 2A (LGMD2A), Duch
Sequence
MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV
CYGRRY
GPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC
PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF
GPTG
IGFGGLTQQVEKKE
Sequence length 194
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cytoskeleton in muscle cells  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cardiomyopathy Likely pathogenic; Pathogenic rs2494220581, rs761507504, rs902082118, rs1850628800, rs935867046 RCV002282800
RCV000769298
RCV000769302
RCV001170940
RCV001170409
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cardiovascular phenotype Pathogenic; Likely pathogenic rs1336937886, rs761507504, rs104894204, rs935867046 RCV004996005
RCV000617264
RCV002399315
RCV004032921
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Dilated cardiomyopathy 1M Pathogenic; Likely pathogenic rs1336937886, rs2133511280, rs2133516329, rs863224716, rs761507504, rs2494223496, rs935867046, rs2494223112, rs2494223132, rs902082118, rs1554968138, rs1554967541, rs759305806, rs1850628800, rs1850523074
View all (2 more)
RCV001885178
RCV001964172
RCV001931050
RCV000198698
RCV000203888
View all (13 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hypertrophic cardiomyopathy Likely pathogenic rs759269008 RCV001283727
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CARDIOMYOPATHIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, DILATED Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, DILATED, 1M CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 1 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma CTD_human_DG 27602772
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune Diseases BEFREE 27696572
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 28925397
★☆☆☆☆
Found in Text Mining only
Cardiomegaly Cardiomegaly Pubtator 35384713 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy BEFREE 21484537, 24860983, 24934443, 25936993, 29119312, 30048712, 30826063
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy Pubtator 22194935, 29222138, 33176267, 35241752, 36270459 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy GENOMICS_ENGLAND_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathy Dilated Dilated cardiomyopathy Pubtator 15582318, 16352453, 20201937, 31406109, 33176267, 35241752 Associate
★☆☆☆☆
Found in Text Mining only