Gene Gene information from NCBI Gene database.
Entrez ID 80326
Gene name Wnt family member 10A
Gene symbol WNT10A
Synonyms (NCBI Gene)
ECTD16OODDSSPSSTHAG4
Chromosome 2
Chromosome location 2q35
Summary The WNT gene family consists of structurally related genes which encode secreted signaling proteins. These proteins have been implicated in oncogenesis and in several developmental processes, including regulation of cell fate and patterning during embryog
SNPs SNP information provided by dbSNP.
26
SNP ID Visualize variation Clinical significance Consequence
rs34972707 A>C Likely-benign, pathogenic, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs77583146 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, intron variant, missense variant
rs116998555 C>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Intron variant, coding sequence variant, missense variant
rs121908118 G>A,T Pathogenic Intron variant, stop gained, coding sequence variant, missense variant
rs121908120 T>A Conflicting-interpretations-of-pathogenicity, benign, pathogenic, likely-benign Intron variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
58
miRTarBase ID miRNA Experiments Reference
MIRT053636 hsa-miR-130a-3p Microarray 22942087
MIRT533154 hsa-miR-4724-5p PAR-CLIP 22012620
MIRT533153 hsa-miR-4690-3p PAR-CLIP 22012620
MIRT533152 hsa-miR-5685 PAR-CLIP 22012620
MIRT533151 hsa-miR-361-3p PAR-CLIP 22012620
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0001942 Process Hair follicle development IMP 17847007, 19559398
GO:0005102 Function Signaling receptor binding IEA
GO:0005109 Function Frizzled binding IBA
GO:0005125 Function Cytokine activity IBA
GO:0005576 Component Extracellular region IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606268 13829 ENSG00000135925
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9GZT5
Protein name Protein Wnt-10a
Protein function Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Functions in the canonical Wnt/beta-catenin signaling pathway (By similarity). Plays a role in normal ectoderm development (PubMed:17847007, PubMed:28589954).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00110 wnt 63 417 wnt family Family
Sequence
Sequence length 417
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  mTOR signaling pathway
Wnt signaling pathway
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Melanogenesis
Cushing syndrome
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
Pathways in cancer
Proteoglycans in cancer
Basal cell carcinoma
Breast cancer
Hepatocellular carcinoma
Gastric cancer
  WNT ligand biogenesis and trafficking
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Ectodermal dysplasia Likely pathogenic; Pathogenic rs121908119 RCV001729335
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Ectodermal dysplasia WNT10A related Likely pathogenic; Pathogenic rs121908119 RCV006249547
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Odonto-onycho-dermal dysplasia Likely pathogenic; Pathogenic rs746813123, rs2106010718, rs2106011673, rs886055642, rs561173643, rs2106016170, rs2106016375, rs2106018205, rs2106018239, rs1559416138, rs2106018397, rs1203128182, rs2106018559, rs2106018717, rs1944675271
View all (74 more)
RCV001378317
RCV001390604
RCV001382583
RCV001388708
RCV001388812
View all (87 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Likely pathogenic; Pathogenic rs2106018205, rs1234227647, rs1221516695, rs1249944381, rs121908119, rs121908121, rs372993798, rs886039453, rs886039454, rs1060499588, rs1085308031, rs543063101, rs762739726, rs764658964, rs1434390821
View all (6 more)
RCV005014540
RCV005606957
RCV005025545
RCV005017009
RCV000004716
View all (16 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormality of the dentition Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANDROGENETIC ALOPECIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arthralgia Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE HYPOHIDROTIC ECTODERMAL DYSPLASIA GenCC, Orphanet
GenCC, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acne Vulgaris Acne GWASCAT_DG 30542056
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 21547848
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia GWASCAT_DG 28196072
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia HPO_DG
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Alopecia, Androgenetic, 1 Androgenetic Alopecia GWASCAT_DG 27182965, 29146897
★☆☆☆☆
Found in Text Mining only
Alopecia, Androgenetic, 2 Androgenetic Alopecia GWASCAT_DG 27182965, 29146897
★☆☆☆☆
Found in Text Mining only
Alopecia, Androgenetic, 3 Androgenetic Alopecia GWASCAT_DG 27182965, 29146897
★☆☆☆☆
Found in Text Mining only
Alopecia, Male Pattern Alopecia, Male Pattern GWASCAT_DG 27182965, 29146897
★☆☆☆☆
Found in Text Mining only
Amelogenesis imperfecta local hypoplastic form Amelogenesis imperfecta Pubtator 35537890 Associate
★☆☆☆☆
Found in Text Mining only