Gene Gene information from NCBI Gene database.
Entrez ID 80204
Gene name F-box protein 11
Gene symbol FBXO11
Synonyms (NCBI Gene)
FBX11IDDFBAPRMT9UBR6UG063H01VIT1
Chromosome 2
Chromosome location 2p16.3
Summary This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), w
SNPs SNP information provided by dbSNP.
14
SNP ID Visualize variation Clinical significance Consequence
rs1553334863 TA>- Pathogenic Stop gained, coding sequence variant
rs1553334874 ->A Pathogenic Stop gained, coding sequence variant
rs1553335247 A>G Pathogenic Coding sequence variant, missense variant
rs1553338592 T>C Pathogenic Coding sequence variant, missense variant
rs1553342101 ->C Pathogenic Splice donor variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
275
miRTarBase ID miRNA Experiments Reference
MIRT025191 hsa-miR-181a-5p Sequencing 20371350
MIRT027332 hsa-miR-101-3p Sequencing 20371350
MIRT030357 hsa-miR-26b-5p Sequencing 20371350
MIRT031059 hsa-miR-21-5p Microarray 18591254
MIRT039392 hsa-miR-421 CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0000151 Component Ubiquitin ligase complex NAS 10531035, 10531037
GO:0001837 Process Epithelial to mesenchymal transition IDA 16096638
GO:0004842 Function Ubiquitin-protein transferase activity IEA
GO:0004842 Function Ubiquitin-protein transferase activity NAS 10531035
GO:0005515 Function Protein binding IPI 17098746, 20596027, 22113614, 22632967, 25203322, 25416956, 27705803, 29892012, 31515488, 33961781
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607871 13590 ENSG00000138081
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q86XK2
Protein name F-box only protein 11 (Protein arginine N-methyltransferase 9) (Vitiligo-associated protein 1) (VIT-1)
Protein function Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as DTL/CDT2, BCL6, SNAI1 and PRDM1/BLIMP1 (P
PDB 5VMD
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12937 F-box-like 157 202 F-box-like Domain
PF13229 Beta_helix 329 495 Right handed beta helix region Family
PF13229 Beta_helix 387 535 Right handed beta helix region Family
PF13229 Beta_helix 481 635 Right handed beta helix region Family
PF13229 Beta_helix 583 714 Right handed beta helix region Family
PF13229 Beta_helix 664 823 Right handed beta helix region Family
PF02207 zf-UBR 834 901 Putative zinc finger in N-recognin (UBR box) Family
Tissue specificity TISSUE SPECIFICITY: Isoform 5 is expressed in keratinocytes, fibroblasts and melanocytes. {ECO:0000269|PubMed:11775060}.
Sequence
MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPP
PPPPPPLPQERNNVGERDDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSME
GASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAA
CVCKRFSELANDPILWKRLYME
VFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLY
KGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWI
YIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNA
HHCLEITVNCSPIIDHCIIRSTCTVG
SAVCVSGQGACPTIKHCNISDCENVGLYITDHAQ
GIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIA
GFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRG
NSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVH
EKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRI
HSGKQVGVYFYDNGHGVLEDNDIYN
HMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNP
TLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAG
IEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQ
DAIEKAVSRGQCLYKIS
SYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCT
L
AGEPTHDTDTLYDSAPPIESNTLQHN
Sequence length 927
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Neddylation
Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
44
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Delayed speech and language development Likely pathogenic rs1672530798 RCV001328479
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Developmental disorder Likely pathogenic rs2531057032 RCV003128063
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
FBXO11-related disorder Likely pathogenic rs770336997, rs772573176, rs2531003311 RCV004752136
RCV003418928
RCV003399845
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Gastric cancer Likely pathogenic; Pathogenic rs1553338592 RCV005901565
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of colon Adenocarcinoma Of Colon CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 29725252
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety disorder Pubtator 30679813 Associate
★☆☆☆☆
Found in Text Mining only
Attention Deficit Disorder with Hyperactivity Attention deficit hyperactivity disorder Pubtator 30679813 Associate
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 30679813, 31838722 Associate
★☆☆☆☆
Found in Text Mining only
B-Cell Lymphomas B-Cell Lymphoma BEFREE 30414952
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 25867061
★☆☆☆☆
Found in Text Mining only
Burkitt Lymphoma Burkitt lymphoma Pubtator 34472720 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 32657545 Inhibit
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 31159774 Associate
★☆☆☆☆
Found in Text Mining only