Gene Gene information from NCBI Gene database.
Entrez ID 80025
Gene name Pantothenate kinase 2
Gene symbol PANK2
Synonyms (NCBI Gene)
C20orf48HARPHSSNBIA1PKAN
Chromosome 20
Chromosome location 20p13
Summary This gene encodes a protein belonging to the pantothenate kinase family and is the only member of that family to be expressed in mitochondria. Pantothenate kinase is a key regulatory enzyme in the biosynthesis of coenzyme A (CoA) in bacteria and mammalian
SNPs SNP information provided by dbSNP.
33
SNP ID Visualize variation Clinical significance Consequence
rs28939088 T>C Pathogenic Intron variant, missense variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant, initiator codon variant
rs137852961 C>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant, 5 prime UTR variant
rs137852962 C>T Pathogenic Coding sequence variant, 5 prime UTR variant, intron variant, non coding transcript variant, missense variant
rs137852963 G>A Pathogenic Coding sequence variant, intron variant, genic downstream transcript variant, non coding transcript variant, missense variant
rs137852964 T>C Pathogenic Coding sequence variant, 5 prime UTR variant, genic downstream transcript variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
157
miRTarBase ID miRNA Experiments Reference
MIRT049757 hsa-miR-92a-3p CLASH 23622248
MIRT047610 hsa-miR-10a-5p CLASH 23622248
MIRT046370 hsa-miR-23b-3p CLASH 23622248
MIRT041189 hsa-miR-497-5p CLASH 23622248
MIRT039651 hsa-miR-615-3p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
FOXN4 Unknown 20603201
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
40
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis IMP 30221726
GO:0004594 Function Pantothenate kinase activity IBA
GO:0004594 Function Pantothenate kinase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606157 15894 ENSG00000125779
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BZ23
Protein name Pantothenate kinase 2, mitochondrial (hPanK2) (EC 2.7.1.33) (Pantothenic acid kinase 2) [Cleaved into: Pantothenate kinase 2, mitochondrial intermediate form (iPanK2); Pantothenate kinase 2, mitochondrial mature form (mPanK2)]
Protein function [Isoform 1]: Mitochondrial isoform that catalyzes the phosphorylation of pantothenate to generate 4'-phosphopantothenate in the first and rate-determining step of coenzyme A (CoA) synthesis (PubMed:15659606, PubMed:16272150, PubMed:17242360, Pub
PDB 5E26
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03630 Fumble 213 565 Fumble Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the brain (at protein level) (PubMed:15659606, PubMed:17825826). Ubiquitous (PubMed:11479594). Highly expressed in the testis (PubMed:17825826). Expressed in the umbilical vein endothelial cells (HUVEC) (PubMed:30221726).
Sequence
Sequence length 570
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Pantothenate and CoA biosynthesis
Metabolic pathways
Biosynthesis of cofactors
  Coenzyme A biosynthesis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
29
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cone-rod dystrophy Pathogenic rs544616523 RCV000678590
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Dystonic disorder Pathogenic rs137852968 RCV001003628
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypoprebetalipoproteinemia, acanthocytosis, retinitis pigmentosa, and pallidal degeneration Likely pathogenic; Pathogenic rs137852959, rs558481390, rs2515522322, rs1057518915, rs753376100, rs755653150, rs1600477446 RCV000132732
RCV003152655
RCV003326731
RCV001196626
RCV001196627
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Neurodegeneration Pathogenic rs1057518915, rs753376100 RCV000415370
RCV000414787
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATYPICAL PANTOTHENATE KINASE ASSOCIATED NEURODEGENERATION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATYPICAL PANTOTHENATE KINASE-ASSOCIATED NEURODEGENERATION Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CLASSIC PANTOTHENATE KINASE-ASSOCIATED NEURODEGENERATION Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONE-ROD DYSTROPHIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abetalipoproteinemia Abetalipoproteinemia BEFREE 16003113, 22027213, 25915509
★☆☆☆☆
Found in Text Mining only
Abetalipoproteinemia Abetalipoproteinemia Pubtator 25915509 Associate
★☆☆☆☆
Found in Text Mining only
Abetalipoproteinemia Abetalipoproteinemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Abnormal involuntary movement Abnormal Involuntary Movement CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Aicardi Goutieres syndrome Aicardi goutieres syndrome Pubtator 29642163 Associate
★☆☆☆☆
Found in Text Mining only
Akinesia Akinesia HPO_DG
★☆☆☆☆
Found in Text Mining only
Ankylosing spondylitis Ankylosing Spondylitis BEFREE 30031384
★☆☆☆☆
Found in Text Mining only
Anorexia Nervosa Anorexia BEFREE 29261731
★☆☆☆☆
Found in Text Mining only
Aortic Valve Insufficiency Aortic Valve Insufficiency BEFREE 16962235
★☆☆☆☆
Found in Text Mining only
Ataxia Ataxia Pubtator 28821231 Associate
★☆☆☆☆
Found in Text Mining only