Gene Gene information from NCBI Gene database.
Entrez ID 799
Gene name Calcitonin receptor
Gene symbol CALCR
Synonyms (NCBI Gene)
CRTCT-RCTRCTR1
Chromosome 7
Chromosome location 7q21.3
Summary This gene encodes a high affinity receptor for the peptide hormone calcitonin and belongs to a subfamily of seven transmembrane-spanning G protein-coupled receptors. The encoded protein is involved in maintaining calcium homeostasis and in regulating oste
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs1801197 A>G Risk-factor Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
66
miRTarBase ID miRNA Experiments Reference
MIRT438265 hsa-miR-29a-3p Luciferase reporter assay 24085298
MIRT438265 hsa-miR-29a-3p Luciferase reporter assay 24085298
MIRT485747 hsa-miR-548c-3p PAR-CLIP 23592263
MIRT485746 hsa-miR-4668-3p PAR-CLIP 23592263
MIRT485745 hsa-miR-4760-3p PAR-CLIP 23592263
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
58
GO ID Ontology Definition Evidence Reference
GO:0001503 Process Ossification IEA
GO:0001540 Function Amyloid-beta binding IDA 22500019
GO:0001635 Function Calcitonin gene-related peptide receptor activity IDA 38603770
GO:0001635 Function Calcitonin gene-related peptide receptor activity IPI 14722252
GO:0001669 Component Acrosomal vesicle IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
114131 1440 ENSG00000004948
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P30988
Protein name Calcitonin receptor (CT-R)
Protein function G protein-coupled receptor activated by ligand peptides amylin (IAPP), calcitonin (CT/CALCA) and calcitonin gene-related peptide type 1 (CGRP1/CALCA) (PubMed:35324283, PubMed:38603770). CALCR interacts with receptor-activity-modifying proteins R
PDB 5II0 , 5UZ7 , 6NIY , 6PFO , 6PGQ , 7TYF , 7TYH , 7TYI , 7TYL , 7TYN , 7TYO , 7TYW , 7TYX , 7TYY , 7TZF , 8F0J , 8F0K , 8F2A , 8F2B , 9AUC
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02793 HRM 69 137 Hormone receptor domain Family
PF00002 7tm_2 145 387 7 transmembrane receptor (Secretin family) Family
Sequence
Sequence length 474
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Neuroactive ligand-receptor interaction
Hormone signaling
Osteoclast differentiation
  G alpha (s) signalling events
Calcitonin-like ligand receptors
ADORA2B mediated anti-inflammatory cytokines production
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
11
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AMENORRHEA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BONE MINERAL DENSITY QUANTITATIVE TRAIT LOCUS 15 Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CALCR-related disorder Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 7606159
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 31837008
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 27429017, 29115578
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 26221725, 31171903
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 27465041
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of rectum Adenocarcinoma Of Rectum BEFREE 27672742
★☆☆☆☆
Found in Text Mining only
Adult Hodgkin Lymphoma Hodgkin Lymphoma BEFREE 30246353, 30708133
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 29750173
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 29115893
★☆☆☆☆
Found in Text Mining only
Allergic rhinitis (disorder) Allergic rhinitis BEFREE 30479743
★☆☆☆☆
Found in Text Mining only