Gene Gene information from NCBI Gene database.
Entrez ID 79751
Gene name Solute carrier family 25 member 22
Gene symbol SLC25A22
Synonyms (NCBI Gene)
DEE3EIEE3GC-1GC1NET44
Chromosome 11
Chromosome location 11p15.5
Summary This gene encodes a mitochondrial glutamate carrier. Mutations in this gene are associated with early infantile epileptic encephalopathy. Multiple alternatively spliced variants, encoding the same protein, have been identified.[provided by RefSeq, Jul 201
SNPs SNP information provided by dbSNP.
20
SNP ID Visualize variation Clinical significance Consequence
rs121918334 G>A Likely-pathogenic Coding sequence variant, missense variant
rs121918335 C>A Pathogenic Coding sequence variant, missense variant
rs141430143 C>T Conflicting-interpretations-of-pathogenicity, benign Coding sequence variant, synonymous variant
rs141975755 C>G,T Likely-benign, conflicting-interpretations-of-pathogenicity, benign, uncertain-significance Coding sequence variant, synonymous variant
rs142220309 G>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
184
miRTarBase ID miRNA Experiments Reference
MIRT001415 hsa-miR-16-5p pSILAC 18668040
MIRT001332 hsa-miR-1-3p pSILAC 18668040
MIRT001332 hsa-miR-1-3p Proteomics;Other 18668040
MIRT001415 hsa-miR-16-5p Proteomics;Other 18668040
MIRT718575 hsa-miR-6736-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0005280 Function Amino acid:proton symporter activity IDA 11897791
GO:0005280 Function Amino acid:proton symporter activity TAS
GO:0005313 Function L-glutamate transmembrane transporter activity IBA
GO:0005313 Function L-glutamate transmembrane transporter activity IDA 11897791
GO:0005313 Function L-glutamate transmembrane transporter activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609302 19954 ENSG00000177542
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9H936
Protein name Mitochondrial glutamate carrier 1 (GC-1) (Glutamate/H(+) symporter 1) (Solute carrier family 25 member 22)
Protein function Mitochondrial glutamate/H(+) symporter. Responsible for the transport of glutamate from the cytosol into the mitochondrial matrix with the concomitant import of a proton (PubMed:11897791). Plays a role in the control of glucose-stimulated insuli
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00153 Mito_carr 4 98 Mitochondrial carrier protein Family
PF00153 Mito_carr 99 216 Mitochondrial carrier protein Family
PF00153 Mito_carr 221 311 Mitochondrial carrier protein Family
Tissue specificity TISSUE SPECIFICITY: Expressed at high levels in brain, liver, and pancreas. {ECO:0000269|PubMed:11897791}.
Sequence
Sequence length 323
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Organic anion transporters
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Developmental and epileptic encephalopathy Pathogenic; Likely pathogenic rs2133702082, rs2133700632, rs1287249801, rs121918334, rs2133698720, rs797045969, rs768343995, rs2495062228, rs781132225, rs1554965669, rs936639741 RCV001891696
RCV002031845
RCV002035158
RCV001851565
RCV002898754
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental and epileptic encephalopathy, 3 Pathogenic; Likely pathogenic rs587777243, rs121918334, rs121918335, rs936639741 RCV002508764
RCV002508754
RCV002508755
RCV002283501
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Early myoclonic encephalopathy Likely pathogenic; Pathogenic rs121918334, rs797045969, rs1554965669, rs1565035177, rs1195505218 RCV000001847
RCV000194231
RCV000499673
RCV000757784
RCV000768417
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 3 HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Developmental delay Conflicting classifications of pathogenicity ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Amaurosis congenita of Leber, type 1 Leber congenital amaurosis BEFREE 21647387
★☆☆☆☆
Found in Text Mining only
Autistic behavior Autism HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebral atrophy Cerebral Atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Choreoathetosis Choreoathetosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Colorectal Carcinoma Colorectal Cancer BEFREE 27451147, 29254168
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 32271418 Stimulate
★☆☆☆☆
Found in Text Mining only
Congenital exomphalos Congenital Exomphalos HPO_DG
★☆☆☆☆
Found in Text Mining only
Cystic Fibrosis Cystic fibrosis Pubtator 39599636 Associate
★☆☆☆☆
Found in Text Mining only
Deglutition Disorders Dysphagia HPO_DG
★☆☆☆☆
Found in Text Mining only