Gene Gene information from NCBI Gene database.
Entrez ID 79738
Gene name Bardet-Biedl syndrome 10
Gene symbol BBS10
Synonyms (NCBI Gene)
C12orf58
Chromosome 12
Chromosome location 12q21.2
Summary This gene is a member of the Bardet-Biedl syndrome (BBS) gene family. Bardet-Biedl syndrome is an autosomal recessive disorder characterized by progressive retinal degeneration, obesity, polydactyly, renal malformation and cognitive disability. The protei
SNPs SNP information provided by dbSNP.
104
SNP ID Visualize variation Clinical significance Consequence
rs137852837 A>C Pathogenic Coding sequence variant, missense variant
rs139658279 C>T Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance Missense variant, coding sequence variant
rs141521925 T>C Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs143366878 A>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs148374859 G>C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
261
miRTarBase ID miRNA Experiments Reference
MIRT019602 hsa-miR-340-5p Sequencing 20371350
MIRT021120 hsa-miR-186-5p Sequencing 20371350
MIRT563311 hsa-miR-548a-5p PAR-CLIP 20371350
MIRT563310 hsa-miR-548ab PAR-CLIP 20371350
MIRT563309 hsa-miR-548ad-5p PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0005515 Function Protein binding IPI 20080638, 28514442, 33961781
GO:0005524 Function ATP binding IEA
GO:0005929 Component Cilium IEA
GO:0007601 Process Visual perception IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610148 26291 ENSG00000179941
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8TAM1
Protein name BBSome complex assembly protein BBS10 (Bardet-Biedl syndrome 10 protein)
Protein function Probable molecular chaperone that assists the folding of proteins upon ATP hydrolysis (PubMed:20080638). Plays a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia (PubMed:20080638). In
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00118 Cpn60_TCP1 21 109 TCP-1/cpn60 chaperonin family Family
PF00118 Cpn60_TCP1 137 430 TCP-1/cpn60 chaperonin family Family
Sequence
MLSSMAAAGSVKAALQVAEVLEAIVSCCVGPEGRQVLCTKPTGEVLLSRNGGRLLEALHL
EHPIARMIVDCVSSHLKKTGDGAKTFIIFLCHLLRGLHAITDREKDPLM
CENIQTHGRHW
KNCSRWKFISQALLTFQTQILDGIMDQYLSRHFLSIFSSAKERTLCRSSLELLLEAYFCG
RVGRNNHKFISQLMCDYFFKCMTCKSGIGVFELVDDHFVELNVGVTGLPVSDSRIIAGLV
LQKDFSVYRPADGDMRMVIVTETIQPLFSTSGSEFILNSEAQFQTSQFWIMEKTKAIMKH
LHSQNVKLLISSVKQPDLVSYYAGVNGISVVECLSSEEVSLIRRIIGLSPFVPPQAFSQC
EIPNTALVKFCKPLILRSKRYVHLGLISTCAFIPHSIVLCGPVHGLIEQHEDALHGALKM
LRQLFKDLDL
NYMTQTNDQNGTSSLFIYKNSGESYQAPDPGNGSIQRPYQDTVAENKDAL
EKTQTYLKVHSNLVIPDVELETYIPYSTPTLTPTDTFQTVETLTCLSLERNRLTDYYEPL
LKNNSTAYSTRGNRIEISYENLQVTNITRKGSMLPVSCKLPNMGTSQSYLSSSMPAGCVL
PVGGNFEILLHYYLLNYAKKCHQSEETMVSMIIANALLGIPKVLYKSKTGKYSFPHTYIR
AVHALQTNQPLVSSQTGLESVMGKYQLLTSVLQCLTKILTIDMVITVKRHPQKVHNQDSE
DEL
Sequence length 723
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    BBSome-mediated cargo-targeting to cilium
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Asphyxiating thoracic dystrophy 3 Pathogenic rs758522600 RCV000256445
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bardet-Biedl syndrome Likely pathogenic; Pathogenic rs1951764875, rs778731343, rs2136090024, rs2136091120, rs199998327, rs2136091240, rs2136091633, rs2136091654, rs760693838, rs1472533012, rs2136089877, rs2136090624, rs2136090739, rs2136090423, rs1951755742
View all (129 more)
RCV001319159
RCV002546463
RCV001386811
RCV001383308
RCV001381069
View all (145 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome 1 Pathogenic; Likely pathogenic rs549625604, rs727503818, rs768933093, rs148374859, rs1460517643, rs1592492255, rs778431173 RCV000709625
RCV001004383
RCV003228914
RCV003228900
RCV000625185
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-biedl syndrome 1/10, digenic Pathogenic rs780059308 RCV002508143
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BBS10-related ciliopathy Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CILIOPATHIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
INTELLECTUAL DISABILITY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Albinism Albinism Pubtator 39596324 Associate
★☆☆☆☆
Found in Text Mining only
Asphyxiating Thoracic Dystrophy 1 Asphyxiating Thoracic Dystrophy CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Bardet-Biedl Syndrome Bardet-Biedl Syndrome BEFREE 16582908, 17106446, 17980398, 20080638, 20805367, 22500027, 23219996, 23403234, 24849935, 25439097, 28143435, 30312873, 31639430
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome CLINVAR_DG 16582908, 17106446, 17980398, 19190184, 20177705, 20472660, 20498079, 20805367, 21044901, 21052717, 21157496, 21209035, 22353939, 22410627, 22773737
View all (12 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome LHGDN 17101080
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome ORPHANET_DG 23219996, 23403234
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome Bardet-Biedl Syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bardet-Biedl syndrome 1 (disorder) Bardet-Biedl Syndrome CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Bardet-Biedl syndrome 1 (disorder) Bardet-Biedl Syndrome GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only
BARDET-BIEDL SYNDROME 10 Bardet-Biedl Syndrome UNIPROT_DG 16582908, 16823392, 20080638, 20120035, 21344540, 23219996, 28808579
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)