Gene Gene information from NCBI Gene database.
Entrez ID 79577
Gene name Cell division cycle 73
Gene symbol CDC73
Synonyms (NCBI Gene)
C1orf28FIHPHPTJTHRPT1HRPT2HYX
Chromosome 1
Chromosome location 1q31.2
Summary This gene encodes a tumor suppressor that is involved in transcriptional and post-transcriptional control pathways. The protein is a component of the the PAF protein complex, which associates with the RNA polymerase II subunit POLR2A and with a histone me
SNPs SNP information provided by dbSNP.
20
SNP ID Visualize variation Clinical significance Consequence
rs80356649 ->AG Pathogenic Frameshift variant, coding sequence variant
rs80356650 GT>- Pathogenic Frameshift variant, coding sequence variant
rs587776559 G>A Pathogenic Splice acceptor variant
rs760591174 AGAG>-,AGAGAG Pathogenic Frameshift variant, coding sequence variant
rs770439843 C>G,T Pathogenic Stop gained, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
497
miRTarBase ID miRNA Experiments Reference
MIRT020706 hsa-miR-155-5p Proteomics 18668040
MIRT048545 hsa-miR-100-5p CLASH 23622248
MIRT046249 hsa-miR-23b-3p CLASH 23622248
MIRT061173 hsa-miR-495-3p HITS-CLIP 23313552
MIRT061176 hsa-miR-5688 HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
WT1 Repression 24257751
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
38
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 18987311
GO:0000781 Component Chromosome, telomeric region HDA 19135898
GO:0000993 Function RNA polymerase II complex binding IBA
GO:0000993 Function RNA polymerase II complex binding IDA 15923622
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607393 16783 ENSG00000134371
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q6P1J9
Protein name Parafibromin (Cell division cycle protein 73 homolog) (Hyperparathyroidism 2 protein)
Protein function Tumor suppressor probably involved in transcriptional and post-transcriptional control pathways. May be involved in cell cycle progression through the regulation of cyclin D1/PRAD1 expression. Component of the PAF1 complex (PAF1C) which has mult
PDB 5YDE , 5YDF , 6TED , 7OOP , 7OPC , 7OPD , 7UNC , 7UND , 8A3Y , 9EGX , 9EGY , 9EGZ , 9EH0 , 9EH2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16050 CDC73_N 1 297 Paf1 complex subunit CDC73 N-terminal Family
PF05179 CDC73_C 356 521 RNA pol II accessory factor, Cdc73 family, C-terminal Domain
Tissue specificity TISSUE SPECIFICITY: Found in adrenal and parathyroid glands, kidney and heart. {ECO:0000269|PubMed:15580289}.
Sequence
Sequence length 531
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Formation of RNA Pol II elongation complex
Formation of the beta-catenin:TCF transactivating complex
Hedgehog 'on' state
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Transcription Elongation
E3 ubiquitin ligases ubiquitinate target proteins
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CDC73-related disorder Pathogenic rs760591174 RCV004529412
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cystic parathyroid adenoma Pathogenic rs587776557 RCV000003432
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial cancer of breast Pathogenic rs1558280170 RCV001310104
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hereditary cancer-predisposing syndrome Pathogenic; Likely pathogenic rs2103121721, rs2103130589, rs1677688362, rs2103123828, rs2103178097, rs2102058252, rs2527493922, rs2527317468, rs2527341649, rs2527289344, rs121434262, rs587776558, rs2527500780, rs587776559, rs2103117916
View all (17 more)
RCV002329408
RCV002421192
RCV004946930
RCV002334977
RCV003164059
View all (27 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Chronic lymphocytic leukemia/small lymphocytic lymphoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colon adenocarcinoma - ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 21692036
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 10395244, 15475453, 15492263, 15956079, 17468190, 17639062, 18063086, 19058032, 19092296, 20473645, 21315421, 21717519, 22987117, 23029104, 23029479
View all (5 more)
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 20473645, 22395475, 27490759
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 26409451
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Thoracic Thoracic aortic aneurysm Pubtator 24823466 Associate
★☆☆☆☆
Found in Text Mining only
Bone Diseases Bone disease Pubtator 37807045 Associate
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 26832176, 35551175 Associate
★☆☆☆☆
Found in Text Mining only
Calcium pyrophosphate deposition disease Chondrocalcinosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 12960210, 17923126, 23361235, 23435613, 32780442, 36611251, 37121965 Associate
★☆☆☆☆
Found in Text Mining only