Gene Gene information from NCBI Gene database.
Entrez ID 79147
Gene name Fukutin related protein
Gene symbol FKRP
Synonyms (NCBI Gene)
FKTRLGMD2ILGMDR9MDC1CMDDGA5MDDGB5MDDGC5
Chromosome 19
Chromosome location 19q13.32
Summary This gene encodes a protein which is targeted to the medial Golgi apparatus and is necessary for posttranslational modification of dystroglycan. Mutations in this gene have been associated with congenital muscular dystrophy, cognitive disability, and cere
SNPs SNP information provided by dbSNP.
90
SNP ID Visualize variation Clinical significance Consequence
rs28937900 C>A,T Likely-pathogenic, pathogenic Synonymous variant, coding sequence variant, missense variant
rs28937901 C>A,T Uncertain-significance, pathogenic Coding sequence variant, missense variant
rs28937902 C>A Pathogenic Coding sequence variant, missense variant
rs28937903 C>A,T Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs28937904 G>A,T Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
193
miRTarBase ID miRNA Experiments Reference
MIRT029898 hsa-miR-26b-5p Microarray 19088304
MIRT039217 hsa-miR-769-5p CLASH 23622248
MIRT723610 hsa-miR-6729-3p HITS-CLIP 19536157
MIRT723609 hsa-miR-1470 HITS-CLIP 19536157
MIRT723608 hsa-miR-4667-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
81
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IDA 26923585, 29477842
GO:0000139 Component Golgi membrane IEA
GO:0001654 Process Eye development IEA
GO:0001701 Process In utero embryonic development IEA
GO:0001764 Process Neuron migration IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606596 17997 ENSG00000181027
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9H9S5
Protein name Ribitol 5-phosphate transferase FKRP (EC 2.7.8.-) (Fukutin-related protein) (Ribitol-5-phosphate transferase)
Protein function Catalyzes the transfer of a ribitol 5-phosphate from CDP-L-ribitol to the ribitol 5-phosphate previously attached by FKTN/fukutin to the phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-3-N-acetylglucosamine-beta-4-(phosphate-
PDB 6KAJ , 6KAK , 6KAL , 6KAM , 6KAN , 6L7S , 6L7T , 6L7U
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04991 LicD 334 374 LicD family Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the retina (at protein level) (PubMed:29416295). Expressed predominantly in skeletal muscle, placenta, and heart and relatively weakly in brain, lung, liver, kidney, and pancreas (PubMed:11592034). {ECO:0000269|PubMed:1159
Sequence
MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD
NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY
VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA
RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF
AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV
VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD
YDVDLGIYLEDVGN
CEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF
YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN
PQYPNPALLSLTGSG
Sequence length 495
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Mannose type O-glycan biosynthesis
Metabolic pathways
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
41
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the musculature Likely pathogenic; Pathogenic rs1173430388, rs1249694833 RCV001814334
RCV001814462
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Acute rhabdomyolysis Likely pathogenic; Pathogenic rs1290836394 RCV005865333
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive limb-girdle muscular dystrophy Likely pathogenic; Pathogenic rs2513984206, rs28937900, rs104894682, rs28937905, rs104894691, rs104894692, rs121908110, rs886042506, rs2513998901, rs1301397800, rs765885747, rs768606230, rs1555739280 RCV002308725
RCV002222338
RCV002222339
RCV004700187
RCV003155013
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Autosomal recessive limb-girdle muscular dystrophy type 2I Likely pathogenic; Pathogenic rs28937901, rs398124395, rs1051900223, rs1311148380, rs554813030, rs1318972801, rs1555738502, rs104894680, rs104894681, rs28937900, rs587777823, rs104894682, rs28937903, rs28937904, rs28937905
View all (49 more)
RCV001831029
RCV000178344
RCV001826153
RCV005014531
RCV001815627
View all (62 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cardiomyopathy Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, DILATED Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CMD DUE TO DYSTROGLYCANOPATHY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL MUSCULAR DYSTROPHY WITH CEREBELLAR INVOLVEMENT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Absence of septum pellucidum Absence Of Septum Pellucidum HPO_DG
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Agyria Agyria HPO_DG
★☆☆☆☆
Found in Text Mining only
alpha-Dystroglycanopathies alpha-Dystroglycanopathy BEFREE 23217329
★☆☆☆☆
Found in Text Mining only
alpha-Dystroglycanopathies alpha-Dystroglycanopathy CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Alpha-Sarcoglycanopathies Limb-girdle muscular dystrophy BEFREE 15726252
★☆☆☆☆
Found in Text Mining only
Anophthalmos Syndromic microphthalmia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anus, Imperforate Imperforate anus HPO_DG
★☆☆☆☆
Found in Text Mining only
Arachnodactyly Arachnodactyly CLINVAR_DG
★☆☆☆☆
Found in Text Mining only