Gene Gene information from NCBI Gene database.
Entrez ID 788
Gene name Solute carrier family 25 member 20
Gene symbol SLC25A20
Synonyms (NCBI Gene)
CACCACT
Chromosome 3
Chromosome location 3p21.31
Summary This gene product is one of several closely related mitochondrial-membrane carrier proteins that shuttle substrates between cytosol and the intramitochondrial matrix space. This protein mediates the transport of acylcarnitines into mitochondrial matrix fo
SNPs SNP information provided by dbSNP.
17
SNP ID Visualize variation Clinical significance Consequence
rs28934589 T>C Pathogenic Missense variant, coding sequence variant
rs151340616 G>A Pathogenic Coding sequence variant, stop gained
rs541208710 A>C Pathogenic Intron variant
rs577331691 C>G Pathogenic Missense variant, coding sequence variant
rs587776759 ->G Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
201
miRTarBase ID miRNA Experiments Reference
MIRT622247 hsa-miR-3156-5p HITS-CLIP 23824327
MIRT622246 hsa-miR-500a-5p HITS-CLIP 23824327
MIRT622245 hsa-miR-501-5p HITS-CLIP 23824327
MIRT622244 hsa-miR-3658 HITS-CLIP 23824327
MIRT622243 hsa-miR-7856-5p HITS-CLIP 23824327
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
PPARA Unknown 19748481
SP1 Unknown 21130740
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
21
GO ID Ontology Definition Evidence Reference
GO:0001701 Process In utero embryonic development IEA
GO:0005476 Function Carnitine:O-acyl-L-carnitine antiporter activity EXP 9399886
GO:0005515 Function Protein binding IPI 32814053
GO:0005739 Component Mitochondrion HDA 20833797
GO:0005739 Component Mitochondrion HTP 34800366
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613698 1421 ENSG00000178537
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43772
Protein name Mitochondrial carnitine/acylcarnitine carrier protein (Carnitine/acylcarnitine translocase) (CAC) (CACT) (Solute carrier family 25 member 20)
Protein function Mediates the electroneutral exchange of acylcarnitines (O-acyl-(R)-carnitine or L-acylcarnitine) of different acyl chain lengths (ranging from O-acetyl-(R)-carnitine to long-chain O-acyl-(R)-carnitines) with free carnitine ((R)-carnitine or L-ca
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00153 Mito_carr 6 104 Mitochondrial carrier protein Family
PF00153 Mito_carr 106 201 Mitochondrial carrier protein Family
PF00153 Mito_carr 205 298 Mitochondrial carrier protein Family
Sequence
Sequence length 301
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Thermogenesis   Carnitine metabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
7
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Carnitine acylcarnitine translocase deficiency Likely pathogenic; Pathogenic rs2083814457, rs970037429, rs997204610, rs2083881207, rs587777286, rs587777287, rs754563147, rs2106672523, rs2106637622, rs1330578621, rs953809517, rs2471005012, rs756998699, rs2471004624, rs587776759
View all (47 more)
RCV003849381
RCV001378280
RCV001733365
RCV003472851
RCV000114402
View all (58 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
SLC25A20-related disorder Pathogenic; Likely pathogenic rs541208710, rs2471021176, rs757552268, rs748394731, rs147540030 RCV004757104
RCV004757591
RCV003972463
RCV003945915
RCV004757381
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARNITINE-ACYLCARNITINE TRANSLOCASE DEFICIENCY CTD, ClinGen, Disgenet, HPO, Orphanet
CTD, ClinGen, Disgenet, HPO, Orphanet
CTD, ClinGen, Disgenet, HPO, Orphanet
CTD, ClinGen, Disgenet, HPO, Orphanet
CTD, ClinGen, Disgenet, HPO, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
INSOMNIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 28671672
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 28647689, 29406041, 30773088
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 29034996
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 28647689, 29406041, 30773088
★☆☆☆☆
Found in Text Mining only
Atrial Fibrillation Atrial Fibrillation BEFREE 27332823
★☆☆☆☆
Found in Text Mining only
Atrial Fibrillation Atrial fibrillation Pubtator 27332823 Associate
★☆☆☆☆
Found in Text Mining only
Atrioventricular Block Atrioventricular block HPO_DG
★☆☆☆☆
Found in Text Mining only
Behavioral variant of frontotemporal dementia Behavioral Variant Of Frontotemporal Dementia BEFREE 19683260
★☆☆☆☆
Found in Text Mining only
beta Thalassemia beta Thalassemia BEFREE 8288615
★☆☆☆☆
Found in Text Mining only
beta^+^ Thalassemia beta Thalassemia BEFREE 8288615
★☆☆☆☆
Found in Text Mining only