Gene Gene information from NCBI Gene database.
Entrez ID 7874
Gene name Ubiquitin specific peptidase 7
Gene symbol USP7
Synonyms (NCBI Gene)
C16DELp13.2DEL16P13.2HAFOUSHAUSPTEF1
Chromosome 16
Chromosome location 16p13.2
Summary The protein encoded by this gene belongs to the peptidase C19 family, which includes ubiquitinyl hydrolases. This protein deubiquitinates target proteins such as p53 (a tumor suppressor protein) and WASH (essential for endosomal protein recycling), and re
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs781247345 G>A,T Pathogenic Coding sequence variant, non coding transcript variant, stop gained, synonymous variant
rs1555462347 CT>- Likely-pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
272
miRTarBase ID miRNA Experiments Reference
MIRT030771 hsa-miR-21-5p Microarray 18591254
MIRT031560 hsa-miR-16-5p Proteomics 18668040
MIRT050139 hsa-miR-26a-5p CLASH 23622248
MIRT040289 hsa-miR-615-3p CLASH 23622248
MIRT036837 hsa-miR-877-3p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
4
Transcription factor Regulation Reference
ATF1 Unknown 7642633
NPM1 Unknown 23183427
SP1 Unknown 7642633
STAT3 Repression 22750444
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
64
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IDA 28890335
GO:0002039 Function P53 binding IDA 20096447
GO:0004197 Function Cysteine-type endopeptidase activity IMP 21745816
GO:0004197 Function Cysteine-type endopeptidase activity TAS 9827704
GO:0004843 Function Cysteine-type deubiquitinase activity EXP 26235645
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602519 12630 ENSG00000187555
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q93009
Protein name Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.4.19.12) (Deubiquitinating enzyme 7) (Herpesvirus-associated ubiquitin-specific protease) (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7)
Protein function Hydrolase that deubiquitinates target proteins such as ARMC5, FOXO4, DEPTOR, KAT5, p53/TP53, MDM2, ERCC6, DNMT1, UHRF1, PTEN, KMT2E/MLL5 and DAXX (PubMed:11923872, PubMed:15053880, PubMed:16964248, PubMed:18716620, PubMed:25283148, PubMed:258657
PDB 1NB8 , 1NBF , 1YY6 , 1YZE , 2F1W , 2F1X , 2F1Y , 2F1Z , 2FOJ , 2FOO , 2FOP , 2KVR , 2XXN , 2YLM , 3MQR , 3MQS , 4JJQ , 4KG9 , 4M5W , 4M5X , 4PYZ , 4WPH , 4WPI , 4YOC , 4YSI , 4Z96 , 4Z97 , 5C56 , 5C6D , 5FWI , 5GG4 , 5J7T , 5JTJ , 5JTV , 5KYB , 5KYC , 5KYD , 5KYE , 5KYF , 5N9R , 5N9T , 5NGE , 5NGF , 5UQV , 5UQX , 5VS6 , 5VSB , 5VSK , 5WHC , 6F5H , 6M1K
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00917 MATH 74 196 MATH domain Domain
PF00443 UCH 214 518 Ubiquitin carboxyl-terminal hydrolase Family
PF12436 USP7_ICP0_bdg 620 865 ICP0-binding domain of Ubiquitin-specific protease 7 Family
PF14533 USP7_C2 875 1086 Ubiquitin-specific protease C-terminal Family
Tissue specificity TISSUE SPECIFICITY: Expressed in neural progenitor cells (at protein level) (PubMed:21258371). Widely expressed. Overexpressed in prostate cancer. {ECO:0000269|PubMed:18716620, ECO:0000269|PubMed:21258371}.
Sequence
MNHQQQQQQQKAGEQQLSEPEDMEMEAGDTDDPPRITQNPVINGNVALSDGHNTAEEDME
DDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQ
CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPE
KGFIDDDKVTFEVFVQ
ADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRK
AVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELC
RVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNI
FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIK
INDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKF
DDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVY
IRESKLSEVLQAVTDHDIPQQL
VERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNS
SLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTI
FLETVDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVM
CDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSEL
PTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFF
KSQGYRDGPGNPLRHNYEGTLRDLL
QFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLN
SQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLE
CLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREV
MKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLD
HFNKAP
KRSRYTYLEKAIKIHN
Sequence length 1102
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Polycomb repressive complex
FoxO signaling pathway
Epstein-Barr virus infection
Viral carcinogenesis
  Ub-specific processing proteases
Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Regulation of TP53 Degradation
Synthesis of active ubiquitin: roles of E1 and E2 enzymes
Regulation of PTEN localization
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
22
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Gastric cancer Pathogenic rs2549212884 RCV005939468
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hao-Fountain syndrome Likely pathogenic; Pathogenic rs2141215483, rs2141186036, rs2141167019, rs2141200474, rs2141202964, rs2141190525, rs2549250330, rs2549240624, rs2549242516, rs2549244919, rs756550597, rs2549225175, rs2549230941, rs2549244890, rs2549232757
View all (10 more)
RCV003224889
RCV001788549
RCV002290715
RCV001728152
RCV001775225
View all (20 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hao-Fountain syndrome due to USP7 mutation Pathogenic; Likely pathogenic rs2549212884, rs2549220874, rs2549229217, rs2061841667 RCV004555389
RCV004560482
RCV004595271
RCV004776301
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypotonia Likely pathogenic; Pathogenic rs2141167019 RCV001526521
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
16P13.2 MICRODELETION SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANDROGENETIC ALOPECIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DIABETIC MACULOPATHY GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial cancer of breast Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
16p13.2 microdeletion syndrome 16p13.2 Deletion Syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 30938820
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 15942648
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 16450335, 25519684, 26678539
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 29045831
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 30938820
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 28137592
★☆☆☆☆
Found in Text Mining only
Alternating hemiplegia of childhood Alternating hemiplegia of childhood Pubtator 31278054 Associate
★☆☆☆☆
Found in Text Mining only
Aneuploidy Aneuploidy Pubtator 23089923 Associate
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder CLINVAR_DG
★☆☆☆☆
Found in Text Mining only