Gene Gene information from NCBI Gene database.
Entrez ID 7546
Gene name Zic family zinc finger 2
Gene symbol ZIC2
Synonyms (NCBI Gene)
HPE5
Chromosome 13
Chromosome location 13q32.3
Summary This gene encodes a member of the ZIC family of C2H2-type zinc finger proteins. This protein functions as a transcriptional repressor and may regulate tissue specific expression of dopamine receptor D1. Expansion of an alanine repeat in the C-terminus of
SNPs SNP information provided by dbSNP.
24
SNP ID Visualize variation Clinical significance Consequence
rs397515364 ->C Pathogenic Coding sequence variant, frameshift variant
rs397515365 GAGAACC>- Pathogenic Coding sequence variant, frameshift variant
rs397515499 G>- Pathogenic Coding sequence variant, frameshift variant
rs397515500 AG>- Pathogenic Coding sequence variant, frameshift variant
rs753776168 C>G,T Pathogenic Stop gained, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
153
miRTarBase ID miRNA Experiments Reference
MIRT048739 hsa-miR-93-5p CLASH 23622248
MIRT044573 hsa-miR-320a CLASH 23622248
MIRT618798 hsa-miR-548ae-3p HITS-CLIP 23824327
MIRT618797 hsa-miR-548ah-3p HITS-CLIP 23824327
MIRT618796 hsa-miR-548aj-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0003677 Function DNA binding IEA
GO:0003677 Function DNA binding ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603073 12873 ENSG00000043355
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95409
Protein name Zinc finger protein ZIC 2 (Zinc finger protein of the cerebellum 2)
Protein function Acts as a transcriptional activator or repressor. Plays important roles in the early stage of organogenesis of the CNS. Activates the transcription of the serotonin transporter SERT in uncrossed ipsilateral retinal ganglion cells (iRGCs) to refi
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18366 zf_ZIC 248 295 Zic proteins zinc finger domain Domain
PF00096 zf-C2H2 333 357 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 363 387 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 393 415 Zinc finger, C2H2 type Domain
Sequence
MLLDAGPQFPAIGVGSFARHHHHSAAAAAAAAAEMQDRELSLAAAQNGFVDSAAAHMGAF
KLNPGAHELSPGQSSAFTSQGPGAYPGSAAAAAAAAALGPHAAHVGSYSGPPFNSTRDFL
FRSRGFGDSAPGGGQHGLFGPGAGGLHHAHSDAQGHLLFPGLPEQHGPHGSQNVLNGQMR
LGLPGEVFGRSEQYRQVASPRTDPYSAAQLHNQYGPMNMNMGMNMAAAAAHHHHHHHHHP
GAFFRYMRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNH
VCFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGE
KPFQCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSPQ
GSESSPAASSGYESSTPPGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGS
GSGGAGGGSGGGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSGLSSNFNEWYV
Sequence length 532
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the nervous system Pathogenic rs2152163576 RCV001814401
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Holoprosencephaly 5 Pathogenic; Likely pathogenic rs2152162756, rs2152163697, rs2152163567, rs2501549421, rs794729641, rs2501549380, rs2501551086, rs2501545060, rs2501544556, rs397515364, rs397515365, rs2152162709, rs2501545280, rs2501544720, rs1060499564
View all (15 more)
RCV001386365
RCV001995308
RCV002001968
RCV002291071
RCV000185543
View all (25 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Holoprosencephaly sequence Likely pathogenic rs1594291868 RCV000787361
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Microcephaly Likely pathogenic rs1594291868 RCV000787361
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ASTROCYTOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, HEPATOCELLULAR CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL NEUROLOGIC ANOMALIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CYCLOCEPHALY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acrania Acrania CTD_human_DG 15136147
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Alobar Holoprosencephaly Alobar Holoprosencephaly ORPHANET_DG
★☆☆☆☆
Found in Text Mining only
Alobar holoprosencephaly Alobar Holoprosencephaly Orphanet
★☆☆☆☆
Found in Text Mining only
Ambiguous Genitalia Ambiguous Genitalia HPO_DG
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 26318045
★☆☆☆☆
Found in Text Mining only
Arachnoid Cysts Arachnoid cyst BEFREE 30855487
★☆☆☆☆
Found in Text Mining only
Arachnoid Cysts Arachnoid cysts Pubtator 30855487 Associate
★☆☆☆☆
Found in Text Mining only
Asplenia Syndrome Asplenia BEFREE 29992973
★☆☆☆☆
Found in Text Mining only
Asthma Asthma HPO_DG
★☆☆☆☆
Found in Text Mining only