Gene Gene information from NCBI Gene database.
Entrez ID 7490
Gene name WT1 transcription factor
Gene symbol WT1
Synonyms (NCBI Gene)
AWT1GUDNPHS4WAGRWIT-2WT-1WT33
Chromosome 11
Chromosome location 11p13
Summary This gene encodes a transcription factor that contains four zinc-finger motifs at the C-terminus and a proline/glutamine-rich DNA-binding domain at the N-terminus. It has an essential role in the normal development of the urogenital system, and it is muta
SNPs SNP information provided by dbSNP.
40
SNP ID Visualize variation Clinical significance Consequence
rs28941777 A>G Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs28941778 C>A,T Pathogenic, likely-pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs28941779 A>G,T Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs28942089 G>A Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs121907900 G>A Likely-pathogenic, pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
118
miRTarBase ID miRNA Experiments Reference
MIRT000817 hsa-miR-15a-5p qRT-PCRproteomics analysis 18362358
MIRT000816 hsa-miR-16-5p qRT-PCRproteomics analysis 18362358
MIRT003966 hsa-miR-212-3p Microarray 17875710
MIRT610238 hsa-miR-8485 HITS-CLIP 19536157
MIRT610238 hsa-miR-8485 HITS-CLIP 19536157
Transcription factors Transcription factors information provided by TRRUST V2 database.
17
Transcription factor Regulation Reference
CTCF Unknown 24534946
EP300 Activation 15752709;18064385
ETS1 Activation 18064385
GATA1 Activation 19212333
GATA1 Unknown 10360378
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
90
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 7585606
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 23042785
GO:0000976 Function Transcription cis-regulatory region binding IDA 1332065, 7585606, 7588596, 9815658, 16467207
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607102 12796 ENSG00000184937
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P19544
Protein name Wilms tumor protein (WT33)
Protein function Transcription factor that plays an important role in cellular development and cell survival (PubMed:7862533). Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3' (PubMed:17716689, PubMed:25258363, PubMed:7862533). Regulates the expressi
PDB 1XF7 , 2JP9 , 2JPA , 2PRT , 3HPJ , 3MYJ , 4R2E , 4R2P , 4R2Q , 4R2R , 4R2S , 4WUU , 5KL2 , 5KL3 , 5KL4 , 5KL5 , 5KL6 , 5KL7 , 6B0O , 6B0P , 6B0Q , 6B0R , 6BLW , 6RSY , 6WLH , 7BBG , 8ISN
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02165 WT1 1 321 Family
PF00096 zf-C2H2 353 377 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 383 405 Zinc finger, C2H2 type Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the kidney and a subset of hematopoietic cells.
Sequence
Sequence length 449
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Transcriptional misregulation in cancer  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
76
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
11p partial monosomy syndrome Pathogenic; Likely pathogenic rs2132942367, rs2133073037, rs2133103216, rs2133072022, rs2133105444, rs2133104877, rs2132939500, rs2132942163, rs2133032244, rs1852674417, rs121907900, rs121907901, rs121907902, rs587776576, rs121907909
View all (41 more)
RCV001381915
RCV001390720
RCV001389217
RCV002022736
RCV001941604
View all (52 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Drash syndrome Pathogenic; Likely pathogenic rs2132942367, rs2133073037, rs2133103216, rs2133072022, rs2133105444, rs2133104877, rs2132939500, rs2132942163, rs2133032244, rs1852674417, rs121907900, rs121907901, rs121907902, rs28941778, rs121907903
View all (49 more)
RCV001381915
RCV001390720
RCV001389217
RCV002022736
RCV001941604
View all (62 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Familial idiopathic steroid-resistant nephrotic syndrome Pathogenic; Likely pathogenic rs587776576, rs587776577, rs869025561 RCV000208283
RCV000157584
RCV000208133
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Focal segmental glomerulosclerosis Pathogenic rs121907909 RCV002293974
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Ambiguous genitalia Conflicting classifications of pathogenicity ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
46, XY Disorders of Sex Development 46, XY disorder of sex development BEFREE 21508141
★☆☆☆☆
Found in Text Mining only
46,XY complete gonadal dysgenesis 46, XY complete gonadal dysgenesis Orphanet
★☆☆☆☆
Found in Text Mining only
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis ORPHANET_DG 25613702
★☆☆☆☆
Found in Text Mining only
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis Orphanet
★☆☆☆☆
Found in Text Mining only
Acoustic Neuroma Acoustic Neuroma BEFREE 21178265
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 8086342, 8132626
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 10480287, 10674900, 10706085, 14510942, 15223632, 15339675, 15894924, 17803653, 18161786, 20013787, 20435628, 24074521, 26514528, 27466479, 27866185
View all (4 more)
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 10480287, 14510942, 15182334, 17505014, 18161786, 19811333, 20435628, 21804407, 7949179
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 19171881, 21189390, 21898091, 23070125, 27748279, 29096332
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia (AML-M2) Leukemia CTD_human_DG 19822134, 27992414
★☆☆☆☆
Found in Text Mining only