Gene Gene information from NCBI Gene database.
Entrez ID 7480
Gene name Wnt family member 10B
Gene symbol WNT10B
Synonyms (NCBI Gene)
SHFM6STHAG8WNT-12
Chromosome 12
Chromosome location 12q13.12
Summary The WNT gene family consists of structurally related genes which encode secreted signaling proteins. These proteins have been implicated in oncogenesis and in several developmental processes, including regulation of cell fate and patterning during embryog
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs121918349 G>A,C,T Pathogenic Missense variant, coding sequence variant, synonymous variant, 3 prime UTR variant
rs763548858 ->TGCT Pathogenic Coding sequence variant, frameshift variant, intron variant
rs763991433 G>A,C Likely-pathogenic Coding sequence variant, stop gained, missense variant
rs766021478 C>T Pathogenic Coding sequence variant, stop gained, 3 prime UTR variant
rs776938956 TGT>- Pathogenic Inframe deletion, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
26
miRTarBase ID miRNA Experiments Reference
MIRT018883 hsa-miR-335-5p Microarray 18185580
MIRT027804 hsa-miR-98-5p Microarray 19088304
MIRT053185 hsa-miR-148a-3p Luciferase reporter assayMicroarrayqRT-PCRWestern blot 22890324
MIRT463936 hsa-miR-376c-3p PAR-CLIP 23592263
MIRT463935 hsa-miR-545-5p PAR-CLIP 23592263
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
65
GO ID Ontology Definition Evidence Reference
GO:0000086 Process G2/M transition of mitotic cell cycle IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0001649 Process Osteoblast differentiation IEA
GO:0002062 Process Chondrocyte differentiation IEP 15135146
GO:0005102 Function Signaling receptor binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601906 12775 ENSG00000169884
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O00744
Protein name Protein Wnt-10b (Protein Wnt-12)
Protein function Member of the Wnt ligand gene family that encodes for secreted proteins, which activate the Wnt signaling cascade. Specifically activates canonical Wnt/beta-catenin signaling and thus triggers beta-catenin/LEF/TCF-mediated transcriptional progra
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00110 wnt 50 389 wnt family Family
Tissue specificity TISSUE SPECIFICITY: Detected in most adult tissues. Highest levels were found in heart and skeletal muscle. Low levels are found in brain.
Sequence
Sequence length 389
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  mTOR signaling pathway
Wnt signaling pathway
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Melanogenesis
Cushing syndrome
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
Pathways in cancer
Proteoglycans in cancer
Basal cell carcinoma
Breast cancer
Hepatocellular carcinoma
Gastric cancer
  WNT ligand biogenesis and trafficking
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
14
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Split hand-foot malformation 6 Pathogenic; Likely pathogenic rs2137615101, rs2137611223, rs2137612860, rs121918349, rs561483849, rs2137615131, rs763548858, rs763991433, rs1163162816, rs776938956, rs1231016571, rs1555177994, rs1565715468, rs1592252556 RCV001807920
RCV002264897
RCV002269797
RCV000008069
RCV003228717
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Tooth agenesis, selective, 8 Pathogenic rs779326570, rs766021478 RCV000239578
RCV000239472
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
WNT10B-related disorder Pathogenic rs763991433 RCV004758043
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DEVELOPMENTAL ABSENCE OF TOOTH Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ECTRODACTYLY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 17614820
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 23135473
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia BEFREE 25860385
★☆☆☆☆
Found in Text Mining only
Androgenetic Alopecia Androgenetic Alopecia BEFREE 27121450
★☆☆☆☆
Found in Text Mining only
Aniridia Aniridia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anodontia Anodontia Pubtator 27321946, 31914153 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 31344532
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 12239602, 27853307, 28394344, 28599424, 9121776
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma CTD_human_DG 12437293
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 23372744, 35413424 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations