Gene Gene information from NCBI Gene database.
Entrez ID 7471
Gene name Wnt family member 1
Gene symbol WNT1
Synonyms (NCBI Gene)
BMND16INT1OI15
Chromosome 12
Chromosome location 12q13.12
Summary The WNT gene family consists of structurally related genes which encode secreted signaling proteins. These proteins have been implicated in oncogenesis and in several developmental processes, including regulation of cell fate and patterning during embryog
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs387907358 G>T Uncertain-significance, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
68
miRTarBase ID miRNA Experiments Reference
MIRT001231 hsa-miR-34a-5p Luciferase reporter assay 19336450
MIRT001231 hsa-miR-34a-5p Luciferase reporter assay 19336450
MIRT001231 hsa-miR-34a-5p Luciferase reporter assay 19336450
MIRT001231 hsa-miR-34a-5p FlowImmunoblotLuciferase reporter assayMicroarrayqRT-PCR 19398721
MIRT005718 hsa-let-7e-5p FlowImmunoblotLuciferase reporter assayMicroarrayqRT-PCR 19398721
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
101
GO ID Ontology Definition Evidence Reference
GO:0000578 Process Embryonic axis specification IEA
GO:0000578 Process Embryonic axis specification ISS
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0005102 Function Signaling receptor binding IEA
GO:0005109 Function Frizzled binding IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
164820 12774 ENSG00000125084
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04628
Protein name Proto-oncogene Wnt-1 (Proto-oncogene Int-1 homolog)
Protein function Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Acts in the canonical Wnt signaling pathway by promoting beta-catenin-dependent transcriptional activation (PubMed:23499309, PubMed:23656646, PubMed:26902720,
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00110 wnt 60 370 wnt family Family
Sequence
Sequence length 370
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  mTOR signaling pathway
Wnt signaling pathway
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Melanogenesis
Cushing syndrome
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
Pathways in cancer
Proteoglycans in cancer
Chemical carcinogenesis - receptor activation
Basal cell carcinoma
Breast cancer
Hepatocellular carcinoma
Gastric cancer
  TCF dependent signaling in response to WNT
WNT ligand biogenesis and trafficking
PCP/CE pathway
Disassembly of the destruction complex and recruitment of AXIN to the membrane
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
22
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Osteogenesis imperfecta Pathogenic rs779969402 RCV002271673
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Osteogenesis imperfecta type 15 Likely pathogenic; Pathogenic rs2137624585, rs779969402, rs2137625115, rs2137625424, rs2137625459, rs727505392, rs2498946534, rs778294620, rs1555178899, rs387907353, rs387907354, rs387907355, rs387907356, rs387907357 RCV001729995
RCV001806348
RCV005006132
RCV002244150
RCV002251300
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
OSTEOPOROSIS, EARLY-ONSET, SUSCEPTIBILITY TO Likely pathogenic; Pathogenic rs2137625115, rs387907353, rs387907356 RCV005006132
RCV000043492
RCV005007964
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
WNT1-related disorder Likely pathogenic rs750005846 RCV003422478
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BONE DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BONE FRAGILITY WITH CONTRACTURES, ARTERIAL RUPTURE, AND DEAFNESS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 30509497
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30926812
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome LHGDN 18844223
★☆☆☆☆
Found in Text Mining only
Alagille Syndrome Alagille Syndrome BEFREE 22156581
★☆☆☆☆
Found in Text Mining only
Ameloblastoma Ameloblastoma BEFREE 22077561, 30008830
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 17289346
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 25811776 Inhibit
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 27889647
★☆☆☆☆
Found in Text Mining only
Arachnoid Cysts Arachnoid cyst BEFREE 30692598
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 10688908, 12428226 Associate
★☆☆☆☆
Found in Text Mining only