Gene Gene information from NCBI Gene database.
Entrez ID 7466
Gene name Wolframin ER transmembrane glycoprotein
Gene symbol WFS1
Synonyms (NCBI Gene)
CTRCT41WFRSWFSWFSL
Chromosome 4
Chromosome location 4p16.1
Summary This gene encodes a transmembrane protein, which is located primarily in the endoplasmic reticulum and ubiquitously expressed with highest levels in brain, pancreas, heart, and insulinoma beta-cell lines. Mutations in this gene are associated with Wolfram
SNPs SNP information provided by dbSNP.
92
SNP ID Visualize variation Clinical significance Consequence
rs6446482 C>A,G Conflicting-interpretations-of-pathogenicity, benign Intron variant
rs10010131 A>G Benign, pathogenic Intron variant
rs28937890 C>T Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs28937891 G>A,T Pathogenic Missense variant, coding sequence variant
rs28937892 C>A,T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
75
miRTarBase ID miRNA Experiments Reference
MIRT000164 hsa-miR-21-5p Quantitative proteomic approach 19253296
MIRT025906 hsa-miR-7-5p Microarray 19073608
MIRT1492376 hsa-miR-1246 CLIP-seq
MIRT1492377 hsa-miR-2110 CLIP-seq
MIRT1492378 hsa-miR-31 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
XBP1 Unknown 16539657
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
76
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 20160352
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0001822 Process Kidney development IMP 9817917
GO:0003091 Process Renal water homeostasis IMP 9817917
GO:0005515 Function Protein binding IPI 17947299, 21044950, 23035048, 25274773, 32296183, 32814053
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606201 12762 ENSG00000109501
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O76024
Protein name Wolframin
Protein function Participates in the regulation of cellular Ca(2+) homeostasis, at least partly, by modulating the filling state of the endoplasmic reticulum Ca(2+) store (PubMed:16989814). Negatively regulates the ER stress response and positively regulates the
Family and domains
Tissue specificity TISSUE SPECIFICITY: Highly expressed in heart followed by brain, placenta, lung and pancreas. Weakly expressed in liver, kidney and skeletal muscle. Also expressed in islet and beta-cell insulinoma cell line.
Sequence
MDSNTAPLGPSCPQPPPAPQPQARSRLNATASLEQERSERPRAPGPQAGPGPGVRDAAAP
AEPQAQHTRSRERADGTGPTKGDMEIPFEEVLERAKAGDPKAQTEVGKHYLQLAGDTDEE
LNSCTAVDWLVLAAKQGRREAVKLLRRCLADRRGITSENEREVRQLSSETDLERAVRKAA
LVMYWKLNPKKKKQVAVAELLENVGQVNEHDGGAQPGPVPKSLQKQRRMLERLVSSESKN
YIALDDFVEITKKYAKGVIPSSLFLQDDEDDDELAGKSPEDLPLRLKVVKYPLHAIMEIK
EYLIDMASRAGMHWLSTIIPTHHINALIFFFIVSNLTIDFFAFFIPLVIFYLSFISMVIC
TLKVFQDSKAWENFRTLTDLLLRFEPNLDVEQAEVNFGWNHLEPYAHFLLSVFFVIFSFP
IASKDCIPCSELAVITGFFTVTSYLSLSTHAEPYTRRALATEVTAGLLSLLPSMPLNWPY
LKVLGQTFITVPVGHLVVLNVSVPCLLYVYLLYLFFRMAQLRNFKGTYCYLVPYLVCFMW
CELSVVILLESTGLGLLRASIGYFLFLFALPILVAGLALVGVLQFARWFTSLELTKIAVT
VAVCSVPLLLRWWTKASFSVVGMVKSLTRSSMVKLILVWLTAIVLFCWFYVYRSEGMKVY
NSTLTWQQYGALCGPRAWKETNMARTQILCSHLEGHRVTWTGRFKYVRVTDIDNSAESAI
NMLPFFIGDWMRCLYGEAYPACSPGNTSTAEEELCRLKLLAKHPCHIKKFDRYKFEITVG
MPFSSGADGSRSREEDDVTKDIVLRASSEFKSVLLSLRQGSLIEFSTILEGRLGSKWPVF
ELKAISCLNCMAQLSPTRRHVKIEHDWRSTVHGAVKFAFDFFFFPFLSAA
Sequence length 890
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Protein processing in endoplasmic reticulum   XBP1(S) activates chaperone genes
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Post-translational protein phosphorylation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
69
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Auditory neuropathy Likely pathogenic rs369062548, rs775303221 RCV003484467
RCV003484490
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal dominant nonsyndromic hearing loss Likely pathogenic; Pathogenic rs74315205, rs387906930 RCV004794324
RCV004808555
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal dominant nonsyndromic hearing loss 6 Likely pathogenic; Pathogenic rs761320763, rs2109107823, rs747658523, rs772357412, rs1381011685, rs2109126109, rs764993824, rs777904670, rs781262017, rs1335076773, rs377544135, rs763677869, rs1560419631, rs2474194199, rs71530923
View all (32 more)
RCV002499595
RCV005023150
RCV001535831
RCV001535945
RCV001536100
View all (42 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cataract 41 Likely pathogenic; Pathogenic rs761320763, rs2109107823, rs747658523, rs772357412, rs1381011685, rs2109126109, rs764993824, rs777904670, rs781262017, rs1335076773, rs377544135, rs763677869, rs1560419631, rs749886570, rs71530923
View all (28 more)
RCV002499595
RCV005023150
RCV001535831
RCV001535945
RCV001536100
View all (38 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Autistic behavior Conflicting classifications of pathogenicity ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
AUTOSOMAL DOMINANT ISOLATED SENSORINEURAL DEAFNESS TYPE DFNA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIPOLAR DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alstrom Syndrome Alstrom syndrome Pubtator 28432734 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia, Megaloblastic Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic Valve Insufficiency Aortic Valve Insufficiency BEFREE 16151413
★☆☆☆☆
Found in Text Mining only
Arachnodactyly Arachnodactyly CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Ataxias, Hereditary Ataxia GENOMICS_ENGLAND_DG 30171196
★☆☆☆☆
Found in Text Mining only
Atrophy of testis Testicular atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Attention Deficit and Disruptive Behavior Disorders Attention deficit hyperactivity disorder Pubtator 37399203 Associate
★☆☆☆☆
Found in Text Mining only
Auditory neuropathy Auditory neuropathy Pubtator 39422244 Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)