Gene Gene information from NCBI Gene database.
Entrez ID 7337
Gene name Ubiquitin protein ligase E3A
Gene symbol UBE3A
Synonyms (NCBI Gene)
ANCRASE6-APEPVE6APHPVE6APIX1
Chromosome 15
Chromosome location 15q11.2
Summary This gene encodes an E3 ubiquitin-protein ligase, part of the ubiquitin protein degradation system. This imprinted gene is maternally expressed in brain and biallelically expressed in other tissues. Maternally inherited deletion of this gene causes Angelm
miRNA miRNA information provided by mirtarbase database.
264
miRTarBase ID miRNA Experiments Reference
MIRT019860 hsa-miR-375 Microarray 20215506
MIRT030496 hsa-miR-24-3p Microarray 19748357
MIRT019860 hsa-miR-375 PAR-CLIP 21572407
MIRT546137 hsa-miR-5692a PAR-CLIP 21572407
MIRT546136 hsa-miR-541-5p PAR-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
60
GO ID Ontology Definition Evidence Reference
GO:0000209 Process Protein polyubiquitination IBA
GO:0000209 Process Protein polyubiquitination IEA
GO:0000502 Component Proteasome complex IEA
GO:0001541 Process Ovarian follicle development IEA
GO:0003713 Function Transcription coactivator activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601623 12496 ENSG00000114062
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q05086
Protein name Ubiquitin-protein ligase E3A (EC 2.3.2.26) (E6AP ubiquitin-protein ligase) (HECT-type ubiquitin transferase E3A) (Human papillomavirus E6-associated protein) (Oncogenic protein-associated protein E6-AP) (Renal carcinoma antigen NY-REN-54)
Protein function E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates (PubMed:10373495, PubMed:16772533, PubMed:19204938, PubMed:19233847, PubMed:19325566, PubMe
PDB 1C4Z , 1D5F , 1EQX , 2KR1 , 4GIZ , 4XR8 , 6SJV , 6SLM , 6TGK , 6U19 , 7Q41 , 7QPB , 8ENP , 8EPT , 8GCR , 8JRN , 8JRO , 8JRP , 8JRQ , 8JRR , 8R1F , 8R1G , 9CHT
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16558 AZUL 29 83 Amino-terminal Zinc-binding domain of ubiquitin ligase E3A Domain
PF00632 HECT 576 875 HECT-domain (ubiquitin-transferase) Domain
Sequence
MEKLHQCYWKSGEPQSDDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTF
LRMDNNAAAIKALELYKINAKLC
DPHPSKKGASSAYLENSKGAPNNSCSEIKMNKKGARI
DFKDVTYLTEEKVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKS
LQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRIGDSSQGDNNLQKLGPDDVSVDIDAIR
RVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPE
YLEMALPLFCKAMSKLPLAAQGKLIRLWSKYNADQIRRMMETFQQLITYKVISNEFNSRN
LVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELTLQELLGEERRNK
KGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNEVLEMDKDYTFFKVETENKFSFMTC
PFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRL
EMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFW
FNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQ
SLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDY
ILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGY
TRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTS
HTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
Sequence length 875
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ubiquitin mediated proteolysis
Human papillomavirus infection
Viral carcinogenesis
  Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Angelman syndrome Pathogenic; Likely pathogenic rs2080191422, rs398124440, rs2152694181, rs2152515149, rs2152848080, rs2152507134, rs2077884610, rs1445563777, rs2152684235, rs2152693602, rs2152683847, rs587781225, rs2152515439, rs587780565, rs587780566
View all (175 more)
RCV001334474
RCV002513849
RCV001726508
RCV001379188
RCV001377695
View all (189 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental delay Likely pathogenic rs1057518777 RCV000414808
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Epileptic encephalopathy Pathogenic rs863225068 RCV001799632
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual disability Pathogenic; Likely pathogenic rs587784527, rs1057518777, rs1595808957, rs997044541, rs2074492359 RCV001260843
RCV000414808
RCV000850199
RCV001260805
RCV001260778
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
15Q11Q13 MICRODUPLICATION SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANGELMAN SYNDROME DUE TO A POINT MUTATION Disgenet, Orphanet
Disgenet, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANGELMAN SYNDROME DUE TO IMPRINTING DEFECT IN 15Q11-Q13 Disgenet, Orphanet
Disgenet, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANGELMAN SYNDROME DUE TO MATERNAL 15Q11Q13 DELETION Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
15q11q13 microduplication syndrome 15q11q13 microduplication syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Angelman Syndrome Angelman Syndrome BEFREE 10089011, 10196695, 10424818, 10558980, 10647895, 10732796, 11238684, 11258627, 11543639, 11579431, 11748306, 12210318, 12566516, 12973656, 14510623
View all (151 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman syndrome Pubtator 10424818, 10647895, 11258627, 11748306, 14966115, 16162432, 17036311, 17965627, 20729760, 21204213, 21587322, 21633703, 22426236, 22645313, 23256887
View all (37 more)
Associate
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman Syndrome CLINVAR_DG 11748306, 14981718, 19213023, 20034088, 24796722, 25212744, 26255772, 26993267, 29188609, 9887341
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman Syndrome LHGDN 12725589, 14981718, 15054837, 17765640, 18487518
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman Syndrome CLINGEN_DG 14981718, 19213023, 24385930, 27174604, 8988171, 8988172, 9288087, 9808466
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman syndrome Pubtator 15607424, 32152487, 32916124, 35218942, 36012404 Inhibit
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman Syndrome CTD_human_DG 15878204
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman Syndrome GENOMICS_ENGLAND_DG 18500341
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Angelman Syndrome Angelman Syndrome UNIPROT_DG 25212744, 9585605
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)