Gene Gene information from NCBI Gene database.
Entrez ID 7248
Gene name TSC complex subunit 1
Gene symbol TSC1
Synonyms (NCBI Gene)
LAMTSC
Chromosome 9
Chromosome location 9q34.13
Summary This gene is a tumor suppressor gene that encodes the growth inhibitory protein hamartin. The encoded protein interacts with and stabilizes the GTPase activating protein tuberin. This hamartin-tuberin complex negatively regulates mammalian target of rapam
SNPs SNP information provided by dbSNP.
265
SNP ID Visualize variation Clinical significance Consequence
rs35958226 C>T Likely-benign, benign-likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs75820036 G>A,C,T Conflicting-interpretations-of-pathogenicity, not-provided, benign-likely-benign, pathogenic, benign, uncertain-significance Stop gained, missense variant, coding sequence variant
rs77464996 G>A,T Conflicting-interpretations-of-pathogenicity, not-provided, likely-benign, benign, uncertain-significance Missense variant, coding sequence variant
rs118203345 A>C,G Likely-pathogenic, not-provided Coding sequence variant, missense variant, intron variant
rs118203352 T>G Pathogenic, not-provided Splice acceptor variant, intron variant
miRNA miRNA information provided by mirtarbase database.
585
miRTarBase ID miRNA Experiments Reference
MIRT006630 hsa-miR-32-5p Luciferase reporter assayqRT-PCRWestern blot 22431589
MIRT019220 hsa-miR-335-5p Microarray 18185580
MIRT044756 hsa-miR-320a CLASH 23622248
MIRT044265 hsa-miR-106b-5p CLASH 23622248
MIRT041346 hsa-miR-193b-3p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
AR Repression 21036700
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
74
GO ID Ontology Definition Evidence Reference
GO:0001822 Process Kidney development IEA
GO:0001843 Process Neural tube closure IEA
GO:0001952 Process Regulation of cell-matrix adhesion IMP 10806479
GO:0002250 Process Adaptive immune response IEA
GO:0005515 Function Protein binding IPI 9580671, 9809973, 10585443, 10806479, 12226091, 17355907, 17658474, 17693255, 18381890, 18692468, 20368287, 20412061, 21134130, 21653829, 25263562, 26893383, 28514442, 28561026, 33436626, 33961781, 38890443
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605284 12362 ENSG00000165699
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92574
Protein name Hamartin (Tuberous sclerosis 1 protein)
Protein function Non-catalytic component of the TSC-TBC complex, a multiprotein complex that acts as a negative regulator of the canonical mTORC1 complex, an evolutionarily conserved central nutrient sensor that stimulates anabolic reactions and macromolecule bi
PDB 4Z6Y , 5EJC , 7DL2 , 9C9I , 9CE3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04388 Hamartin 7 719 Hamartin protein Family
Tissue specificity TISSUE SPECIFICITY: Highly expressed in skeletal muscle, followed by heart, brain, placenta, pancreas, lung, liver and kidney (PubMed:9242607). Also expressed in embryonic kidney cells (PubMed:9242607). {ECO:0000269|PubMed:9242607}.
Sequence
MAQQANVGELLAMLDSPMLGVRDDVTAVFKENLNSDRGPMLVNTLVDYYLETSSQPALHI
LTTLQEPHDKHLLDRINEYVGKAATRLSILSLLGHVIRLQPSWKHKLSQAPLLPSLLKCL
KMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVAEVYLVHL
HASVYALFHRLYGMYPCNFVSFLRSHYSMKENLETFEEVVKPMMEHVRIHPELVTGSKDH
ELDPRRWKRLETHDVVIECAKISLDPTEASYEDGYSVSHQISARFPHRSADVTTSPYADT
QNSYGCATSTPYSTSRLMLLNMPGQLPQTLSSPSTRLITEPPQATLWSPSMVCGMTTPPT
SPGNVPPDLSHPYSKVFGTTAGGKGTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPR
KEERMDSARPCLHRQHHLLNDRGSEEPPGSKGSVTLSDLPGFLGDLASEEDSIEKDKEEA
AISRELSEITTAEAEPVVPRGGFDSPFYRDSLPGSQRKTHSAASSSQGASVNPEPLHSSL
DKLGPDTPKQAFTPIDLPCGSADESPAGDRECQTSLETSIFTPSPCKIPPPTRVGFGSGQ
PPPYDHLFEVALPKTAHHFVIRKTEELLKKAKGNTEEDGVPSTSPMEVLDRLIQQGADAH
SKELNKLPLPSKSVDWTHFGGSPPSDEIRTLRDQLLLLHNQLLYERFKRQQHALRNRRL
L
RKVIKAAALEEHNAAMKDQLKLQEKDIQMWKVSLQKEQARYNQLQEQRDTMVTKLHSQIR
QLQHDREEFYNQSQELQTKLEDCRNMIAELRIELKKANNKVCHTELLLSQVSQKLSNSES
VQQQMEFLNRQLLVLGEVNELYLEQLQNKHSDTTKEVEMMKAAYRKELEKNRSHVLQQTQ
RLDTSQKRILELESHLAKKDHLLLEQKKYLEDVKLQARGQLQAAESRYEAQKRITQVFEL
EILDLYGRLEKDGLLKKLEEEKAEAAEAAEERLDCCNDGCSDSMVGHNEEASGHNGETKT
PRPSSARGSSGSRGGGGSSSSSSELSTPEKPPHQRAGPFSSRWETTMGEASASIPTTVGS
LPSSKSFLGMKARELFRNKSESQCDEDGMTSSLSESLKTELGKDLGVEAKIPLNLDGPHP
SPPTPDSVGQLHIMDYNETHHEHS
Sequence length 1164
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Phospholipase D signaling pathway
Autophagy - animal
mTOR signaling pathway
PI3K-Akt signaling pathway
AMPK signaling pathway
Longevity regulating pathway
Cellular senescence
Thermogenesis
Insulin signaling pathway
Human cytomegalovirus infection
Human papillomavirus infection
Herpes simplex virus 1 infection
Choline metabolism in cancer
  Macroautophagy
Inhibition of TSC complex formation by PKB
Energy dependent regulation of mTOR by LKB1-AMPK
TP53 Regulates Metabolic Genes
TBC/RABGAPs
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
74
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Adenoma sebaceum Likely pathogenic rs1057518945 RCV000415178
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal dominant epilepsy Likely pathogenic rs2538620466 RCV003156201
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cardiac rhabdomyoma Pathogenic rs118203682 RCV000415379
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cholangiocarcinoma Pathogenic rs118203717 RCV005937414
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Angiofibromas Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Astrocytoma Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism spectrum disorder Benign; Likely benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acoustic Neuroma Acoustic Neuroma BEFREE 28265819, 28283837
★☆☆☆☆
Found in Text Mining only
Action Myoclonus-Renal Failure Syndrome Action Myoclonus-Renal Failure Syndrome CTD_human_DG 17484760
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 19250671, 19286253
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 17003820, 25476905, 27289491, 28065512, 31619031
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 11696455, 15541811, 28302097, 9699531
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 18413730
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 11696455, 15541811
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 15565817
★☆☆☆☆
Found in Text Mining only
Adrenocortical Carcinoma Adrenocortical carcinoma Pubtator 33626208 Associate
★☆☆☆☆
Found in Text Mining only
Adult Hepatocellular Carcinoma Liver carcinoma ORPHANET_DG 27974549
★☆☆☆☆
Found in Text Mining only