Gene Gene information from NCBI Gene database.
Entrez ID 7148
Gene name Tenascin XB
Gene symbol TNXB
Synonyms (NCBI Gene)
EDS3EDSCLLEDSCLL1HXBLTENXTN-XTNXTNXB1TNXB2TNXBSVUR8XBXBS
Chromosome 6
Chromosome location 6p21.33-p21.32
Summary This gene encodes a member of the tenascin family of extracellular matrix glycoproteins. The tenascins have anti-adhesive effects, as opposed to fibronectin which is adhesive. This protein is thought to function in matrix maturation during wound healing,
SNPs SNP information provided by dbSNP.
14
SNP ID Visualize variation Clinical significance Consequence
rs121912575 C>T Pathogenic, uncertain-significance Missense variant, genic upstream transcript variant, coding sequence variant
rs144556766 AC>-,ACAC Pathogenic Frameshift variant, coding sequence variant, genic upstream transcript variant
rs201397168 T>A Likely-pathogenic, uncertain-significance Coding sequence variant, genic upstream transcript variant, missense variant
rs201510617 C>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs587777682 G>A Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
16
miRTarBase ID miRNA Experiments Reference
MIRT036021 hsa-miR-1301-3p CLASH 23622248
MIRT1445811 hsa-miR-3919 CLIP-seq
MIRT1445812 hsa-miR-4691-5p CLIP-seq
MIRT1445813 hsa-miR-516a-3p CLIP-seq
MIRT1445814 hsa-miR-137 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
44
GO ID Ontology Definition Evidence Reference
GO:0005178 Function Integrin binding ISS
GO:0005201 Function Extracellular matrix structural constituent ISS
GO:0005201 Function Extracellular matrix structural constituent RCA 20551380, 25037231, 27559042, 28327460, 28675934
GO:0005515 Function Protein binding IPI 21516116, 25416956, 32296183, 32814053, 35443807
GO:0005518 Function Collagen binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600985 11976 ENSG00000168477
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P22105
Protein name Tenascin-X (TN-X) (Hexabrachion-like protein)
Protein function Appears to mediate interactions between cells and the extracellular matrix. Substrate-adhesion molecule that appears to inhibit cell migration. Accelerates collagen fibril formation. May play a role in supporting the growth of epithelial tumors.
PDB 2CUH , 2CUI , 2CUM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07974 EGF_2 187 213 EGF-like domain Domain
PF18720 EGF_Tenascin 248 276 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 279 307 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 310 338 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 341 369 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 372 400 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 434 462 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 496 524 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 527 555 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 558 586 Tenascin EGF domain Domain
PF18720 EGF_Tenascin 589 617 Tenascin EGF domain Domain
PF07974 EGF_2 621 647 EGF-like domain Domain
PF00041 fn3 750 832 Fibronectin type III domain Domain
PF00041 fn3 841 919 Fibronectin type III domain Domain
PF00041 fn3 1062 1141 Fibronectin type III domain Domain
PF00041 fn3 1159 1240 Fibronectin type III domain Domain
PF00041 fn3 1262 1342 Fibronectin type III domain Domain
PF00041 fn3 1373 1453 Fibronectin type III domain Domain
PF00041 fn3 1475 1555 Fibronectin type III domain Domain
PF00041 fn3 1578 1656 Fibronectin type III domain Domain
PF00041 fn3 1674 1753 Fibronectin type III domain Domain
PF00041 fn3 1777 1857 Fibronectin type III domain Domain
PF00041 fn3 1881 1960 Fibronectin type III domain Domain
PF00041 fn3 1988 2068 Fibronectin type III domain Domain
PF00041 fn3 2096 2176 Fibronectin type III domain Domain
PF00041 fn3 2196 2275 Fibronectin type III domain Domain
PF00041 fn3 2304 2384 Fibronectin type III domain Domain
PF00041 fn3 2412 2492 Fibronectin type III domain Domain
PF00041 fn3 2523 2603 Fibronectin type III domain Domain
PF00041 fn3 2629 2709 Fibronectin type III domain Domain
PF00041 fn3 2737 2817 Fibronectin type III domain Domain
PF00041 fn3 2845 2925 Fibronectin type III domain Domain
PF00041 fn3 2953 3033 Fibronectin type III domain Domain
PF00041 fn3 3061 3141 Fibronectin type III domain Domain
PF00041 fn3 3167 3247 Fibronectin type III domain Domain
PF00041 fn3 3263 3341 Fibronectin type III domain Domain
PF00041 fn3 3355 3436 Fibronectin type III domain Domain
PF00041 fn3 3449 3530 Fibronectin type III domain Domain
PF00041 fn3 3557 3637 Fibronectin type III domain Domain
PF00041 fn3 3656 3741 Fibronectin type III domain Domain
PF00041 fn3 3757 3836 Fibronectin type III domain Domain
PF00041 fn3 3846 3926 Fibronectin type III domain Domain
PF00041 fn3 3934 4012 Fibronectin type III domain Domain
PF00147 Fibrinogen_C 4026 4235 Fibrinogen beta and gamma chains, C-terminal globular domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in fetal adrenal, in fetal testis, fetal smooth, striated and cardiac muscle. Isoform XB-short is only expressed in the adrenal gland.
Sequence
MMPAQYALTSSLVLLVLLSTARAGPFSSRSNVTLPAPRPPPQPGGHTVGAGVGSPSSQLY
EHTVEGGEKQVVFTHRINLPPSTGCGCPPGTEPPVLASEVQALRVRLEILEELVKGLKEQ
CTGGCCPASAQAGTGQTDVRTLCSLHGVFDLSRCTCSCEPGWGGPTCSDPTDAEIPPSSP
PSASGSCPDDCNDQGRCVRGRCVCFPGYTGPSCGWPSCPGDCQGRGRCVQGVCVCRAGFS
GPDCSQRSCPRGCSQRGRCEGGRCVCDPGYTGDDCGMRSCPRGCSQRGRCENGRCVCNPG
YTGEDCG
VRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWDCGEGGRCVDGRCVCW
PGYTGEDCS
TRTCPRDCRGRGRCEDGECICDTGYSGDDCGVRSCPGDCNQRGRCEDGRCV
CWPGYTGTDCGSRACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCRGRGRCESGR
CMCWPGYTGRDCGTRACPGDCRGRGRCVDGRCVCNPGFTGEDCGSRRCPGDCRGHGLCED
GVCVCDAGYSGEDCS
TRSCPGGCRGRGQCLDGRCVCEDGYSGEDCGVRQCPNDCSQHGVC
QDGVCICWEGYVSEDCS
IRTCPSNCHGRGRCEEGRCLCDPGYTGPTCATRMCPADCRGRG
RCVQGVCLCHVGYGGEDCGQEEPPASACPGGCGPRELCRAGQCVCVEGFRGPDCAIQTCP
GDCRGRGECHDGSCVCKDGYAGEDCGEEVPTIEGMRMHLLEETTVRTEWTPAPGPVDAYE
IQFIPTTEGASPPFTARVPSSASAYDQRGLAPGQEYQVTVRALRGTSWGLPA
SKTITTMI
DGPQDLRVVAVTPTTLELGWLRPQAEVDRFVVSYVSAGNQRVRLEVPPEADGTLLTDLMP
GVEYVVTVTAERGRAVSYP
ASVRANTGSSPLGLLGTTDEPPPSGPSTTQGAQAPLLQQRP
QELGELRVLGRDETGRLRVVWTAQPDTFAYFQLRMRVPEGPGAHEEVLPGDVRQALVPPP
PPGTPYELSLHGVPPGGKPSDPIIYQGIMDKDEEKPGKSSGPPRLGELTVTDRTSDSLLL
RWTVPEGEFDSFVIQYKDRDGQPQVVPVEGPQRSAVITSLDPGRKYKFVLYGFVGKKRHG
P
LVAEAKILPQSDPSPGTPPHLGNLWVTDPTPDSLHLSWTVPEGQFDTFMVQYRDRDGRP
QVVPVEGPERSFVVSSLDPDHKYRFTLFGIANKKRYGPLT
ADGTTAPERKEEPPRPEFLE
QPLLGELTVTGVTPDSLRLSWTVAQGPFDSFMVQYKDAQGQPQAVPVAGDENEVTVPGLD
PDRKYKMNLYGLRGRQRVGPES
VVAKTAPQEDVDETPSPTELGTEAPESPEEPLLGELTV
TGSSPDSLSLFWTVPQGSFDSFTVQYKDRDGRPRAVRVGGKESEVTVGGLEPGHKYKMHL
YGLHEGQRVGPVS
AVGVTAPQQEETPPATESPLEPRLGELTVTDVTPNSVGLSWTVPEGQ
FDSFIVQYKDKDGQPQVVPVAADQREVTVYNLEPERKYKMNMYGLHDGQRMGPLS
VVIVT
APLPPAPATEASKPPLEPRLGELTVTDITPDSVGLSWTVPEGEFDSFVVQYKDRDGQPQV
VPVAADQREVTIPDLEPSRKYKFLLFGIQDGKRRSP
VSVEAKTVARGDASPGAPPRLGEL
WVTDPTPDSLRLSWTVPEGQFDSFVVQFKDKDGPQVVPVEGHERSVTVTPLDAGRKYRFL
LYGLLGKKRHGPL
TADGTTEARSAMDDTGTKRPPKPRLGEELQVTTVTQNSVGLSWTVPE
GQFDSFVVQYKDRDGQPQVVPVEGSLREVSVPGLDPAHRYKLLLYGLHHGKRVGPIS
AVA
ITAGREETETETTAPTPPAPEPHLGELTVEEATSHTLHLSWMVTEGEFDSFEIQYTDRDG
QLQMVRIGGDRNDITLSGLESDHRYLVTLYGFSDGKHVGP
VHVEALTVPEEEKPSEPPTA
TPEPPIKPRLGELTVTDATPDSLSLSWTVPEGQFDHFLVQYRNGDGQPKAVRVPGHEEGV
TISGLEPDHKYKMNLYGFHGGQRMGPVS
VVGVTAAEEETPSPTEPSMEAPEPAEEPLLGE
LTVTGSSPDSLSLSWTVPQGRFDSFTVQYKDRDGRPQVVRVGGEESEVTVGGLEPGRKYK
MHLYGLHEGRRVGPVS
AVGVTAPEEESPDAPLAKLRLGQMTVRDITSDSLSLSWTVPEGQ
FDHFLVQFKNGDGQPKAVRVPGHEDGVTISGLEPDHKYKMNLYGFHGGQRVGPVS
AVGLT
APGKDEEMAPASTEPPTPEPPIKPRLEELTVTDATPDSLSLSWTVPEGQFDHFLVQYKNG
DGQPKATRVPGHEDRVTISGLEPDNKYKMNLYGFHGGQRVGPVS
AIGVTAAEEETPSPTE
PSMEAPEPPEEPLLGELTVTGSSPDSLSLSWTVPQGRFDSFTVQYKDRDGRPQVVRVGGE
ESEVTVGGLEPGRKYKMHLYGLHEGRRVGPVS
TVGVTAPQEDVDETPSPTEPGTEAPGPP
EEPLLGELTVTGSSPDSLSLSWTVPQGRFDSFTVQYKDRDGRPQAVRVGGQESKVTVRGL
EPGRKYKMHLYGLHEGRRLGPVS
AVGVTEDEAETTQAVPTMTPEPPIKPRLGELTMTDAT
PDSLSLSWTVPEGQFDHFLVQYRNGDGQPKAVRVPGHEDGVTISGLEPDHKYKMNLYGFH
GGQRVGPIS
VIGVTAAEEETPSPTELSTEAPEPPEEPLLGELTVTGSSPDSLSLSWTIPQ
GHFDSFTVQYKDRDGRPQVMRVRGEESEVTVGGLEPGRKYKMHLYGLHEGRRVGPVS
TVG
VTAPEDEAETTQAVPTTTPEPPNKPRLGELTVTDATPDSLSLSWMVPEGQFDHFLVQYRN
GDGQPKVVRVPGHEDGVTISGLEPDHKYKMNLYGFHGGQRVGPIS
VIGVTAAEEETPAPT
EPSTEAPEPPEEPLLGELTVTGSSPDSLSLSWTIPQGRFDSFTVQYKDRDGRPQVVRVRG
EESEVTVGGLEPGCKYKMHLYGLHEGQRVGPVS
AVGVTAPKDEAETTQAVPTMTPEPPIK
PRLGELTVTDATPDSLSLSWMVPEGQFDHFLVQYRNGDGQPKAVRVPGHEDGVTISGLEP
DHKYKMNLYGFHGGQRVGPVS
AIGVTEEETPSPTEPSTEAPEAPEEPLLGELTVTGSSPD
SLSLSWTVPQGRFDSFTVQYKDRDGQPQVVRVRGEESEVTVGGLEPGRKYKMHLYGLHEG
QRVGPVS
TVGITAPLPTPLPVEPRLGELAVAAVTSDSVGLSWTVAQGPFDSFLVQYRDAQ
GQPQAVPVSGDLRAVAVSGLDPARKYKFLLFGLQNGKRHGP
VPVEARTAPDTKPSPRLGE
LTVTDATPDSVGLSWTVPEGEFDSFVVQYKDKDGRLQVVPVAANQREVTVQGLEPSRKYR
FLLYGLSGRKRLGPIS
ADSTTAPLEKELPPHLGELTVAEETSSSLRLSWTVAQGPFDSFV
VQYRDTDGQPRAVPVAADQRTVTVEDLEPGKKYKFLLYGLLGGKRLGPVS
ALGMTAPEED
TPAPELAPEAPEPPEEPRLGVLTVTDTTPDSMRLSWSVAQGPFDSFVVQYEDTNGQPQAL
LVDGDQSKILISGLEPSTPYRFLLYGLHEGKRLGPLS
AEGTTGLAPAGQTSEESRPRLSQ
LSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVL
RDLRSGTLYSLTLYGLRGPHK
ADSIQGTARTLSPVLESPRDLQFSEIRETSAKVNWMPPP
SRADSFKVSYQLADGGEPQSVQVDGQARTQKLQGLIPGARYEVTVVSVRGFEESEP
LTGF
LTTVPDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDVQVTAPGAPPLQAETPGSAVDYPL
HDLVLHTNYTATVRGLRGPNLTSPAS
ITFTTGLEAPRDLEAKEVTPRTALLTWTEPPVRP
AGYLLSFHTPGGQNQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPP
VSTSFTTG
GLRIPFPRDCGEEMQNGAGASRTSTIFLNGNRERPLNVFCDMETDGGGWLVFQRRMDGQT
DFWRDWEDYAHGFGNISGEFWLGNEALHSLTQAGDYSMRVDLRAGDEAVFAQYDSFHVDS
AAEYYRLHLEGYHGTAGDSMSYHSGSVFSARDRDPNSLLISCAVSYRGAWWYRNCHYANL
NGLYGSTVDHQGVSWYHWKGFEFSVPFTEMKLRPR
NFRSPAGGG
Sequence length 4244
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  PI3K-Akt signaling pathway
Focal adhesion
ECM-receptor interaction
Human papillomavirus infection
MicroRNAs in cancer
  ECM proteoglycans
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
66
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cardiovascular phenotype Likely pathogenic; Pathogenic rs1777434181, rs749742731, rs200357005, rs764867655, rs2127254498, rs2483604684, rs2483454633, rs2483701960, rs765028734, rs764070148, rs779751914, rs762652171, rs1780315559, rs749890642, rs1779660599 RCV004227787
RCV006377320
RCV002406883
RCV002359256
RCV002373073
View all (10 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Ehlers-Danlos syndrome Likely pathogenic; Pathogenic rs755541448, rs2127254498, rs2151900685, rs2151892576, rs2151892569, rs2151892548, rs773500008 RCV002278088
RCV002278117
RCV002278142
RCV002278149
RCV002278150
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Ehlers-Danlos syndrome due to tenascin-X deficiency Likely pathogenic; Pathogenic rs1777434181, rs2151897511, rs749742731, rs748223125, rs200357005, rs759929653, rs764867655, rs587777682, rs755541448, rs2127254498, rs1416828643, rs765028734, rs764070148, rs144556766, rs762652171
View all (8 more)
RCV005047385
RCV005864574
RCV001787232
RCV003388029
RCV005040375
View all (18 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
TNXB-related disorder Likely pathogenic; Pathogenic rs2151897511, rs764070148, rs779751914, rs34629684, rs749890642, rs750030373 RCV003900795
RCV004751208
RCV003963782
RCV003402975
RCV003401402
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Adrenocortical carcinoma, hereditary Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma GWASDB_DG 19836008
★☆☆☆☆
Found in Text Mining only
Adrenal Hyperplasia Congenital Congenital adrenal hyperplasia Pubtator 10207042, 19921645, 23284009, 24380766, 26075496, 27297501, 31229653, 31666125, 33332743, 36264454, 36833192 Associate
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 22694956, 26861912, 30642396
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration GWASDB_DG 22694956
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration GWASCAT_DG 22694956
★☆☆☆☆
Found in Text Mining only
Ambiguous genitalia, female Ambiguous Genitalia HPO_DG
★☆☆☆☆
Found in Text Mining only
Aneurysm Aneurysm Pubtator 39382597 Associate
★☆☆☆☆
Found in Text Mining only
Anorexia Nervosa Anorexia BEFREE 27367046
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Abdominal Aortic aneurysm Pubtator 21048318 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Dissection Aortic dissection Pubtator 40650310 Associate
★☆☆☆☆
Found in Text Mining only