Gene Gene information from NCBI Gene database.
Entrez ID 7105
Gene name Tetraspanin 6
Gene symbol TSPAN6
Synonyms (NCBI Gene)
T245TM4SF6TSPAN-6
Chromosome X
Chromosome location Xq22.1
Summary The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate
miRNA miRNA information provided by mirtarbase database.
306
miRTarBase ID miRNA Experiments Reference
MIRT021536 hsa-miR-145-5p Reporter assay;Microarray 21351259
MIRT021618 hsa-miR-142-3p Microarray 17612493
MIRT021861 hsa-miR-132-3p Microarray 17612493
MIRT021978 hsa-miR-128-3p Microarray 17612493
MIRT022561 hsa-miR-124-3p Microarray 18668037
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
7
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 22908223
GO:0005886 Component Plasma membrane IBA
GO:0016020 Component Membrane IEA
GO:0039532 Process Negative regulation of cytoplasmic pattern recognition receptor signaling pathway IMP 22908223
GO:0043123 Process Positive regulation of canonical NF-kappaB signal transduction HMP 12761501
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300191 11858 ENSG00000000003
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43657
Protein name Tetraspanin-6 (Tspan-6) (A15 homolog) (Putative NF-kappa-B-activating protein 321) (T245 protein) (Tetraspanin TM4-D) (Transmembrane 4 superfamily member 6)
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00335 Tetraspanin 17 236 Tetraspanin family Family
Sequence
Sequence length 245
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
1
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
GOUT GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Breast Neoplasms Breast neoplasm Pubtator 36867531 Associate
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 26494939 Associate
★☆☆☆☆
Found in Text Mining only
EPILEPSY, FEMALE-RESTRICTED, WITH MENTAL RETARDATION (disorder) Epileptic Encephalopathy And Intellectual Disability BEFREE 28207852
★☆☆☆☆
Found in Text Mining only
Familial Alzheimer Disease (FAD) Alzheimer disease BEFREE 28279219
★☆☆☆☆
Found in Text Mining only
Glioma Glioma Pubtator 39472973 Associate
★☆☆☆☆
Found in Text Mining only
Intellectual Disability Mental retardation BEFREE 28207852
★☆☆☆☆
Found in Text Mining only