Gene Gene information from NCBI Gene database.
Entrez ID 7092
Gene name Tolloid like 1
Gene symbol TLL1
Synonyms (NCBI Gene)
ASD6TLL
Chromosome 4
Chromosome location 4q32.3
Summary This gene encodes an astacin-like, zinc-dependent, metalloprotease that belongs to the peptidase M12A family. This protease processes procollagen C-propeptides, such as chordin, pro-biglycan and pro-lysyl oxidase. Studies in mice suggest that this gene pl
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs137852951 A>C,G Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs137852952 T>C Pathogenic Missense variant, coding sequence variant
rs137852953 A>G Pathogenic Missense variant, coding sequence variant, genic downstream transcript variant
rs1579663872 A>G Pathogenic Genic downstream transcript variant, splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
170
miRTarBase ID miRNA Experiments Reference
MIRT017300 hsa-miR-335-5p Microarray 18185580
MIRT616133 hsa-miR-3924 HITS-CLIP 23824327
MIRT616132 hsa-miR-7159-3p HITS-CLIP 23824327
MIRT616131 hsa-miR-4482-3p HITS-CLIP 23824327
MIRT636163 hsa-miR-4773 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
21
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development TAS 8661043
GO:0004222 Function Metalloendopeptidase activity IBA
GO:0004222 Function Metalloendopeptidase activity IEA
GO:0004222 Function Metalloendopeptidase activity TAS
GO:0004252 Function Serine-type endopeptidase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606742 11843 ENSG00000038295
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43897
Protein name Tolloid-like protein 1 (EC 3.4.24.-)
Protein function Protease which processes procollagen C-propeptides, such as chordin, pro-biglycan and pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogene
PDB 3EDI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01400 Astacin 155 348 Astacin (Peptidase family M12A) Domain
PF00431 CUB 349 458 CUB domain Domain
PF00431 CUB 462 571 CUB domain Domain
PF14670 FXa_inhibition 578 614 Domain
PF00431 CUB 618 727 CUB domain Domain
PF07645 EGF_CA 730 774 Calcium-binding EGF domain Domain
PF00431 CUB 774 883 CUB domain Domain
PF00431 CUB 887 1000 CUB domain Domain
Sequence
MGLGTLSPRMLVWLVASGIVFYGELWVCAGLDYDYTFDGNEEDKTETIDYKDPCKAAVFW
GDIALDDEDLNIFQIDRTIDLTQNPFGNLGHTTGGLGDHAMSKKRGALYQLIDRIRRIGF
GLEQNNTVKGKVPLQFSGQNEKNRVPRAATSRTERIWPGGVIPYVIGGNFTGSQRAMFKQ
AMRHWEKHTCVTFIERSDEESYIVFTYRPCGCCSYVGRRGNGPQAISIGKNCDKFGIVVH
ELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYA
RNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSKGDIAQARKLYRCPA
CGETLQESNGNL
SSPGFPNGYPSYTHCIWRVSVTPGEKIVLNFTTMDLYKSSLCWYDYIEVRDGYWRKSPLL
GRFCGDKLPEVLTSTDSRMWIEFRSSSNWVGKGFAAVY
EAICGGEIRKNEGQIQSPNYPD
DYRPMKECVWKITVSESYHVGLTFQSFEIERHDNCAYDYLEVRDGTSENSPLIGRFCGYD
KPEDIRSTSNTLWMKFVSDGTVNKAGFAANF
FKEEDECAKPDRGGCEQRCLNTLGSYQCA
CEPGYELGPDRRSC
EAACGGLLTKLNGTITTPGWPKEYPPNKNCVWQVVAPTQYRISVKF
EFFELEGNEVCKYDYVEIWSGLSSESKLHGKFCGAEVPEVITSQFNNMRIEFKSDNTVSK
KGFKAHF
FSDKDECSKDNGGCQHECVNTMGSYMCQCRNGFVLHDNKHDCKEAECEQKIHS
PSGLITSPNWPDKYPSRKECTWEISATPGHRIKLAFSEFEIEQHQECAYDHLEVFDGETE
KSPILGRLCGNKIPDPLVATGNKMFVRFVSDASVQRKGFQATH
STECGGRLKAESKPRDL
YSHAQFGDNNYPGQVDCEWLLVSERGSRLELSFQTFEVEEEADCGYDYVELFDGLDSTAV
GLGRFCGSGPPEEIYSIGDSVLIHFHTDDTINKKGFHIRY
KSIRYPDTTHTKK
Sequence length 1013
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Degradation of the extracellular matrix
Collagen biosynthesis and modifying enzymes
Anchoring fibril formation
Crosslinking of collagen fibrils
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Atrial septal defect 6 Pathogenic rs137852951, rs137852953 RCV000004289
RCV000004291
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTROCYTOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL SEPTAL DEFECT, OSTIUM PRIMUM TYPE Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL SEPTAL DEFECT, OSTIUM SECUNDUM TYPE Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
ATRIAL SEPTAL DEFECT 1 Atrial Septal Defect BEFREE 18830233, 31570783
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defect 6 Atrial Septal Defect GENOMICS_ENGLAND_DG 18830233
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Atrial Septal Defect 6 Atrial Septal Defect UNIPROT_DG 18830233
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Atrial Septal Defect 6 Atrial Septal Defect BEFREE 30538173
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Atrial Septal Defect 6 Atrial Septal Defect CTD_human_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Atrial Septal Defect 6 Atrial Septal Defect CLINVAR_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Atrial septal defect, ostium primum type Atrial Septal Defect Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrial septal defect, ostium secundum type Atrial Septal Defect Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrial Septal Defects Atrial Septal Defect BEFREE 16369476, 18830233, 27418595, 31570783
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrial Septal Defects Atrial Septal Defect HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations