Gene Gene information from NCBI Gene database.
Entrez ID 7007
Gene name Tectorin alpha
Gene symbol TECTA
Synonyms (NCBI Gene)
DFNA12DFNA8DFNB21
Chromosome 11
Chromosome location 11q23.3
Summary The tectorial membrane is an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells. Sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads
SNPs SNP information provided by dbSNP.
52
SNP ID Visualize variation Clinical significance Consequence
rs121909058 A>G Pathogenic Coding sequence variant, missense variant
rs121909059 T>A Pathogenic Coding sequence variant, missense variant
rs121909060 G>C Pathogenic Coding sequence variant, missense variant
rs121909061 T>C,G Pathogenic Coding sequence variant, missense variant
rs121909062 G>A Uncertain-significance, pathogenic Coding sequence variant, missense variant
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0005201 Function Extracellular matrix structural constituent IBA
GO:0005201 Function Extracellular matrix structural constituent IEA
GO:0005576 Component Extracellular region IEA
GO:0005576 Component Extracellular region TAS
GO:0005886 Component Plasma membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602574 11720 ENSG00000109927
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75443
Protein name Alpha-tectorin
Protein function One of the major non-collagenous components of the tectorial membrane (By similarity). The tectorial membrane is an extracellular matrix of the inner ear that covers the neuroepithelium of the cochlea and contacts the stereocilia bundles of spec
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06119 NIDO 163 251 Nidogen-like Family
PF00094 VWD 322 478 von Willebrand factor type D domain Family
PF08742 C8 523 591 C8 domain Domain
PF01826 TIL 597 650 Trypsin Inhibitor like cysteine rich domain Domain
PF12714 TILa 651 706 TILa domain Domain
PF00094 VWD 713 866 von Willebrand factor type D domain Family
PF08742 C8 911 980 C8 domain Domain
PF01826 TIL 984 1036 Trypsin Inhibitor like cysteine rich domain Domain
PF00094 VWD 1100 1258 von Willebrand factor type D domain Family
PF08742 C8 1300 1368 C8 domain Domain
PF01826 TIL 1372 1425 Trypsin Inhibitor like cysteine rich domain Domain
PF12714 TILa 1426 1480 TILa domain Domain
PF00094 VWD 1487 1639 von Willebrand factor type D domain Family
PF08742 C8 1690 1757 C8 domain Domain
PF00100 Zona_pellucida 1806 2057 Zona pellucida-like domain Family
Sequence
MNYSSFLRIWVSFIFALVQHQAQPRELMYPFWQNDTKTPKVDDGSSSEIKLAIPVFFFGV
PYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFVAPFWADVHNGIRGEIYYRETMEPA
ILKRATKDIRKYFKDMATFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVLVSDGSYTFTL
FNYYEINWTTGTASGGDPLTGLGGVMAQAGFNGGNLTNFFSLPGSRTPEIVNIQETTNVN
VPGRWAFKVDG
KEIDPANGCTSRGQFLRRGEVFWDDLNCTVKCRCLDFNNEIYCQEASCS
PYEVCEPKGKFFYCSAVETSTCVVFGEPHYHTFDGFLFHFQGSCAYLLARQCLQTSSLPF
FSVEAKNEHRRGSAVSWVKELSVEVNGYKILIPKGSYGRVKVNDLVTSLPVTLDLGTVKI
YQSGISTAVETDFGLLVTFDGQHYASISVPGSYINSTCGLCGNYNKNPLDDFLRPDGR
PA
MSVLDLGESWRVYHADWKCDSGCVDNCTQCDAATEALYFGSDYCGFLNKTDGPLWECGTV
VDPTAFVHSCVYDLCSVRDNGTLLCQAIQAYALVCQALGIPIGDWRTQTGC
VSTVQCPSF
SHYSVCTSSCPDTCSDLTASRNCATPCTEGCECNQGFVLSTSQCVPLHKC
GCDFDGHYYT
MGEFFWATANCTVQCLCEEGGDVYCFNKTCGSGEVCAVEDGYQGCF
PKRETVCLLSQNQV
LHTFDGASYAFPSEFSYTLLKTCPERPEYLEIDINKKKPDAGPAWLRGLRILVADQEVKI
GGIGASEVKLNGQEVELPFFHPSGKLEIYRNKNSTTVESKGVVTVQYSDIGLLYIRLSTT
YFNCTGGLCGFYNANASDEFCLPNGK
CTDNLAVFLESWTTFEEICNGECGDLLKACNNDS
ELLKFYRSRSRCGIINDPSNSSFLECHGVVNVTAYYRTCLFRLCQSGGNESELCDSVARY
ASACKNADVEVGPWRTYDFC
PLECPENSHFEECITCTETCETLTLGPICVDSCSEGCQCD
EGYALLGSQCVTRSEC
GCNFEGHQLATNETFWVDLDCQIFCYCSGTDNRVHCETIPCKDD
EYCMEEGGLYYCQARTDASCIVSGYGHYLTFDGFPFDFQTSCPLILCTTGSRPSSDSFPK
FVVTAKNEDRDPSLALWVKQVDVTVFGYSIVIHRAYKHTVLVNSERLYLPLKLGQGKINI
FSFGFHVVVETDFGLKVVYDWKTFLSITVPRSMQNSTYGLCGRYNGNPDDDLEMPMGL
LA
SSVNEFGQSWVKRDTFCQVGCGDRCPSCAKVEGFSKVQQLCSLIPNQNAAFSKCHSKVNP
TFFYKNCLFDSCIDGGAVQTACSWLQNYASTCQTQGITVTGWRNYTSC
TVTCPPNSHYES
CVSVCQPRCAAIRLKSDCSHYCVEGCHCDAGYVLNGKSCILPHSC
GCYSDGKYYEPKQLF
WNSDCTRRCRCFRRNVIQCDPRQCKSDEECALRNGVRGCF
STKTSYCLAAGGGVFRTFDG
AFLRFPANCAFVLSTICQKLPDISFQLIINFDKWSAPNLTIISPVYFYINEEQILINDRN
TVKVNGTQVNVPFITGLATKIYSSEGFLVIDTSPDIQIYYNGFNVIKISISERLQNKVCG
LCGNFNGDLTDDYVTLRGK
PVVSSVVLAQSWKTNGMQKRPLAPSCNELQFSQYAAMCDNV
HIQKMQGDGYCLKLTDMKGFFQPCYGLLDPLPFYESCYLDGCYSHKKFQLCGSLAAYGEA
CRSFGILSTEWIEKENC
SGVVEDPCVGADCPNRTCELGNGRELCGCIEPPPYGNNSHDII
DAEVTCKAAQMEVSISKCKLFQLGFEREGVRINDRQCTGIEGEDFISFQINNTKGNCGNI
VQSNGTHIMYKNTLWIESANNTGNIITRDRTINVEFSCAYELDIKISLDSVVKPMLSVIN
LTVPTQEGSFITKMALYKNASYKHPYRQGEVVLTTRDVLYVGVFVVGADATHLILTLNKC
YATPTRDSNDKLRYFIIEGGCQNLKDNTIGIEENAVSLTCRFHVTVFKFIGDYDEVHLHC
AVSLCDSEKYSCKITCP
HNSRIATDYTKEPKEQIISVGPIRRKRLDWCEDNGGCEQICTS
RVDGPLCSCVTGTLQEDGKSCRASNSSMELQVWTLLLIMIQISLWHFVYKSGTTS
Sequence length 2155
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Post-translational modification: synthesis of GPI-anchored proteins
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal dominant nonsyndromic hearing loss 12 Likely pathogenic; Pathogenic rs1947056659, rs2135128814, rs2135050168, rs1380941851, rs2496977483, rs121909058, rs966621865, rs121909059, rs121909060, rs121909061, rs121909063, rs1591462832, rs753896285, rs140236996, rs878853224
View all (5 more)
RCV001327987
RCV002250765
RCV002503291
RCV002287280
RCV003984868
View all (16 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Autosomal recessive nonsyndromic hearing loss 21 Likely pathogenic; Pathogenic rs2135050168, rs1946605498, rs267602733, rs764994708, rs2496925088, rs374455045, rs769965398, rs966621865, rs757886838, rs764153521, rs199638531, rs1565519673, rs368050948, rs1565541888, rs773573968
View all (1 more)
RCV002503291
RCV001809330
RCV002251127
RCV002463191
RCV002444382
View all (11 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Bilateral sensorineural hearing impairment Pathogenic rs2135128814 RCV001730849
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deafness Likely pathogenic; Pathogenic rs1565522273 RCV000679840
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTOSOMAL DOMINANT ISOLATED SENSORINEURAL DEAFNESS TYPE DFNA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT NONSYNDROMIC HEARING LOSS Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE ISOLATED SENSORINEURAL DEAFNESS TYPE DFNB Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Autosomal dominant non-syndromic sensorineural deafness type DFNA Non-Syndromic Sensorineural Deafness Orphanet
★☆☆☆☆
Found in Text Mining only
Autosomal recessive non-syndromic sensorineural deafness type DFNB Non-Syndromic Sensorineural Deafness Orphanet
★☆☆☆☆
Found in Text Mining only
Conductive hearing loss Hearing Loss BEFREE 22796475, 24378291
★☆☆☆☆
Found in Text Mining only
Deafness Deafness Pubtator 22534022, 23226338, 23767834, 24586623, 24816743, 33976695, 34997062, 9150164 Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deafness Deafness Pubtator 23936151 Stimulate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deafness Autosomal Dominant 12 Deafness Pubtator 37927186 Associate
★☆☆☆☆
Found in Text Mining only
Deafness autosomal dominant nonsyndromic sensorineural 22 Autosomal dominant sensorineural deafness Pubtator 24586623 Associate
★☆☆☆☆
Found in Text Mining only
Deafness Autosomal Recessive 21 Deafness Pubtator 28012541 Associate
★☆☆☆☆
Found in Text Mining only
Deafness, Autosomal Dominant 10 Deafness BEFREE 27142990
★☆☆☆☆
Found in Text Mining only
Deafness, Autosomal Dominant 12 Deafness UNIPROT_DG 12746400, 9949200
★★☆☆☆
Found in Text Mining + Unknown/Other Associations