Gene Gene information from NCBI Gene database.
Entrez ID 6928
Gene name HNF1 homeobox B
Gene symbol HNF1B
Synonyms (NCBI Gene)
ADTKD3FJHNHNF-1-betaHNF-1BHNF1betaHNF2HPC11LF-B3LFB3MODY5RCADT2DTCF-2TCF2VHNF1
Chromosome 17
Chromosome location 17q12
Summary This gene encodes a member of the homeodomain-containing superfamily of transcription factors. The protein binds to DNA as either a homodimer, or a heterodimer with the related protein hepatocyte nuclear factor 1-alpha. The gene has been shown to function
SNPs SNP information provided by dbSNP.
16
SNP ID Visualize variation Clinical significance Consequence
rs141166864 A>G Conflicting-interpretations-of-pathogenicity, benign-likely-benign Intron variant
rs764042837 G>-,GG Likely-pathogenic, pathogenic Coding sequence variant, genic downstream transcript variant, frameshift variant, intron variant
rs886041820 ->G Pathogenic Coding sequence variant, frameshift variant
rs1555833071 TCGT>- Pathogenic Frameshift variant, coding sequence variant
rs1555833144 C>- Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
37
miRTarBase ID miRNA Experiments Reference
MIRT024651 hsa-miR-215-5p Microarray 19074876
MIRT026957 hsa-miR-192-5p Microarray 19074876
MIRT755748 hsa-miR-217 Luciferase reporter assayWestern blottingqRT-PCRFlow cytometry 35046625
MIRT1050546 hsa-miR-3157-5p CLIP-seq
MIRT1050547 hsa-miR-3665 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
74
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
189907 11630 ENSG00000275410
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P35680
Protein name Hepatocyte nuclear factor 1-beta (HNF-1-beta) (HNF-1B) (Homeoprotein LFB3) (Transcription factor 2) (TCF-2) (Variant hepatic nuclear factor 1) (vHNF1)
Protein function Transcription factor that binds to the inverted palindrome 5'-GTTAATNATTAAC-3' (PubMed:17924661, PubMed:7900999). Binds to the FPC element in the cAMP regulatory unit of the PLAU gene (By similarity). Transcriptional activity is increased by coa
PDB 2DA6 , 2H8R , 5K9S
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04814 HNF-1_N 8 174 Hepatocyte nuclear factor 1 (HNF-1), N terminus Family
PF04812 HNF-1B_C 314 550 Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus Family
Sequence
Sequence length 557
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Maturity onset diabetes of the young  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
90
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal dominant medullary cystic kidney disease with or without hyperuricemia Pathogenic rs121918672 RCV001328308
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Chromophobe renal cell carcinoma Pathogenic rs587776771 RCV000013483
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital anomaly of kidney and urinary tract Likely pathogenic; Pathogenic rs121918674 RCV001328307
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
HNF1B-related disorder Pathogenic; Likely pathogenic rs193922486, rs1568670479, rs2511701125, rs2511709958, rs2511808486, rs914046953, rs1568670481, rs2511801587, rs121918672, rs2511828535 RCV004753563
RCV003390678
RCV003402173
RCV003404563
RCV003982645
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
17Q12 MICRODELETION SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autosomal dominant polycystic liver disease Uncertain significance; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT TUBULOINTERSTITIAL KIDNEY DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
17q12 microdeletion syndrome 17q12 Deletion Syndrome BEFREE 22178801, 25324567, 31391355, 31498910
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
17q12 microdeletion syndrome 17q12 Deletion Syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
2,8-Dihydroxyadenine Urolithiasis 2,8-Dihydroxyadenine Urolithiasis BEFREE 24961278
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 29664741
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer GWASCAT_DG 27197191
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma GWASCAT_DG 27197191
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 26574638
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Clear Cell Adenocarcinoma BEFREE 24040285, 31361605
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 21438902, 31570790
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 17001320
★☆☆☆☆
Found in Text Mining only