Gene Gene information from NCBI Gene database.
Entrez ID 6905
Gene name Tubulin folding cofactor E
Gene symbol TBCE
Synonyms (NCBI Gene)
HRDKCSKCS1PEAMOpac2
Chromosome 1
Chromosome location 1q42.3
Summary Cofactor E is one of four proteins (cofactors A, D, E, and C) involved in the pathway leading to correctly folded beta-tubulin from folding intermediates. Cofactors A and D are believed to play a role in capturing and stabilizing beta-tubulin intermediate
SNPs SNP information provided by dbSNP.
16
SNP ID Visualize variation Clinical significance Consequence
rs121908384 T>A Pathogenic Stop gained, coding sequence variant
rs139440109 C>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs141498084 T>G Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs143886167 A>G Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, 5 prime UTR variant, missense variant
rs144448831 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
1
miRTarBase ID miRNA Experiments Reference
MIRT042552 hsa-miR-423-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0000226 Process Microtubule cytoskeleton organization IBA
GO:0000226 Process Microtubule cytoskeleton organization IEA
GO:0000226 Process Microtubule cytoskeleton organization IEA
GO:0000226 Process Microtubule cytoskeleton organization IMP 27666369
GO:0005515 Function Protein binding IPI 27666374
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604934 11582 ENSG00000284770
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q15813
Protein name Tubulin-specific chaperone E (Tubulin-folding cofactor E)
Protein function Tubulin-folding protein; involved in the second step of the tubulin folding pathway and in the regulation of tubulin heterodimer dissociation. Required for correct organization of microtubule cytoskeleton and mitotic splindle, and maintenance of
PDB 4ICU , 4ICV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01302 CAP_GLY 10 75 CAP-Gly domain Domain
PF14560 Ubiquitin_2 446 526 Ubiquitin-like domain Domain
Sequence
MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK
CRHPTGGSFIRPNKV
NFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM
KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH
LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN
IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG
CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA
SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF
LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR
LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVR
W
Sequence length 527
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
40
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal recessive Kenny-Caffey syndrome Likely pathogenic; Pathogenic rs1188106799, rs767004810, rs758937799, rs1329466833, rs200356271, rs1572391840, rs1681531187 RCV005005995
RCV000191990
RCV000490495
RCV005014791
RCV001198592
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Disorder of sexual differentiation Likely pathogenic; Pathogenic rs200356271 RCV001568319
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Encephalopathy, progressive, with amyotrophy and optic atrophy Likely pathogenic; Pathogenic rs1188106799, rs2102920283, rs767004810, rs758937799, rs1329466833, rs750781063, rs780472451, rs1553336397, rs200356271, rs1681531187 RCV005005995
RCV001807925
RCV003989279
RCV004796107
RCV005014791
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hypoparathyroidism-retardation-dysmorphism syndrome Likely pathogenic; Pathogenic rs1188106799, rs767004810, rs1572324681, rs121908384, rs758937799, rs1329466833, rs200356271, rs1572391840, rs1681531187 RCV005005995
RCV000005608
RCV000005610
RCV000005611
RCV000490495
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTOSOMAL DOMINANT KENNY-CAFFEY SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Chronic lymphocytic leukemia/small lymphocytic lymphoma Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute monocytic leukemia Monocytic Leukemia BEFREE 22535659
★☆☆☆☆
Found in Text Mining only
Anarthria speech disorder Anarthria Speech Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Astigmatism Astigmatism HPO_DG
★☆☆☆☆
Found in Text Mining only
Autosomal recessive Kenny-Caffey syndrome Kenny-Caffey Syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Brain Diseases Brain disease Pubtator 29921875 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 28212573
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital Abnormalities Congenital abnormalities Pubtator 36258138 Associate
★☆☆☆☆
Found in Text Mining only
Congenital anomaly of face Facial dysmorphism BEFREE 17257873, 30055029
★☆☆☆☆
Found in Text Mining only