Gene Gene information from NCBI Gene database.
Entrez ID 6899
Gene name T-box transcription factor 1
Gene symbol TBX1
Synonyms (NCBI Gene)
CAFSCATCH22CTHMDGCRDGSDORVTBX1CTGAVCFVCFS
Chromosome 22
Chromosome location 22q11.21
Summary This gene is a member of a phylogenetically conserved family of genes that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of developmental processes. This gene product shares 98% amino aci
SNPs SNP information provided by dbSNP.
17
SNP ID Visualize variation Clinical significance Consequence
rs28939675 T>A Pathogenic Upstream transcript variant, coding sequence variant, genic upstream transcript variant, missense variant
rs74315522 C>G Pathogenic Upstream transcript variant, coding sequence variant, genic upstream transcript variant, missense variant
rs144848597 G>A,C,T Pathogenic Coding sequence variant, stop gained, missense variant
rs753613632 C>T Conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, missense variant
rs766608075 C>T Conflicting-interpretations-of-pathogenicity Upstream transcript variant, missense variant, coding sequence variant, genic upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
74
miRTarBase ID miRNA Experiments Reference
MIRT041674 hsa-miR-484 CLASH 23622248
MIRT037556 hsa-miR-744-5p CLASH 23622248
MIRT035924 hsa-miR-1180-3p CLASH 23622248
MIRT1415060 hsa-miR-1279 CLIP-seq
MIRT1415061 hsa-miR-3673 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
83
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin IBA
GO:0000785 Component Chromatin ISA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602054 11592 ENSG00000184058
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43435
Protein name T-box transcription factor TBX1 (T-box protein 1) (Testis-specific T-box protein)
Protein function Transcription factor that plays a key role in cardiovascular development by promoting pharyngeal arch segmentation during embryonic development (By similarity). Also involved in craniofacial muscle development (By similarity). Together with NKX2
PDB 4A04
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00907 T-box 112 297 T-box Domain
Sequence
MHFSTVTRDMEAFTASSLSSLGAAGGFPGAASPGADPYGPREPPPPPPRYDPCAAAAPGA
PGPPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAKVAGVSVQLEMKALW
DEFNQLGTEMIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWL
VAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPR
FHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD
CDP
EDWPRNHRPGALPLMSAFARSRNPVASPTQPSGTEKGGHVLKDKEVKAETSRNTPEREVE
LLRDAGGCVNLGLPCPAECQPFNTQGLVAGRTAGDRLC
Sequence length 398
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
40
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Conotruncal anomaly face syndrome Pathogenic rs28939675, rs1601294362 RCV001815165
RCV001815166
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
DiGeorge syndrome Pathogenic; Likely pathogenic rs1936852915, rs2145838229, rs2145835194, rs1936845711, rs2145827929, rs1731409120, rs2145827917, rs2145836457, rs2517841942, rs1321457390, rs2517843174, rs2474263656, rs2517855397, rs2517855328, rs776268518
View all (7 more)
RCV001332793
RCV001383639
RCV001908785
RCV001992593
RCV001866498
View all (18 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
KBG syndrome Pathogenic rs1936760837 RCV001261282
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
TBX1-related disorder Likely pathogenic; Pathogenic rs1731409120, rs2517852372 RCV004782842
RCV003907094
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
22Q11.2 DELETION SYNDROME GWAS catalog, Orphanet
GWAS catalog, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
22Q11.2 DUPLICATION SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
22q11 Deletion Syndrome 22q11 deletion syndrome BEFREE 11811651, 12175881, 16684884, 17622328, 17850965, 19247433, 21177346, 22801995, 9268629
★☆☆☆☆
Found in Text Mining only
22q11 Deletion Syndrome 22q11 deletion syndrome ORPHANET_DG 14585638
★☆☆☆☆
Found in Text Mining only
22q11 Deletion Syndrome 22q11 deletion syndrome Pubtator 17028864 Inhibit
★☆☆☆☆
Found in Text Mining only
22q11 partial monosomy syndrome 22q11 partial monosomy syndrome BEFREE 11811651
★☆☆☆☆
Found in Text Mining only
22q11 partial monosomy syndrome 22q11 partial monosomy syndrome ORPHANET_DG 14585638
★☆☆☆☆
Found in Text Mining only
22q11.2 deletion syndrome 22q11.2 deletion syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
22q11.2 duplication syndrome 22q11.2 duplication syndrome Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
3C syndrome 3C syndrome BEFREE 8870617
★☆☆☆☆
Found in Text Mining only
Acne Acne HPO_DG
★☆☆☆☆
Found in Text Mining only
Acrocephaly Acrocephaly HPO_DG
★☆☆☆☆
Found in Text Mining only