Gene Gene information from NCBI Gene database.
Entrez ID 6853
Gene name Synapsin I
Gene symbol SYN1
Synonyms (NCBI Gene)
EPILXEPILX1MRX50SYN1aSYN1bSYNI
Chromosome X
Chromosome location Xp11.3-p11.23
Summary This gene is a member of the synapsin gene family. Synapsins encode neuronal phosphoproteins which associate with the cytoplasmic surface of synaptic vesicles. Family members are characterized by common protein domains, and they are implicated in synaptog
SNPs SNP information provided by dbSNP.
22
SNP ID Visualize variation Clinical significance Consequence
rs41298474 G>A Conflicting-interpretations-of-pathogenicity, likely-pathogenic Coding sequence variant, missense variant
rs137852560 C>T Pathogenic Coding sequence variant, stop gained
rs145911562 T>C Conflicting-interpretations-of-pathogenicity, benign, likely-benign Synonymous variant, coding sequence variant
rs150248483 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Synonymous variant, coding sequence variant
rs200533370 T>C Conflicting-interpretations-of-pathogenicity, benign, likely-benign Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
29
miRTarBase ID miRNA Experiments Reference
MIRT018882 hsa-miR-335-5p Microarray 18185580
MIRT733606 hsa-miR-140-5p ImmunofluorescenceqRT-PCRWestern blotting 33987369
MIRT1405388 hsa-miR-1290 CLIP-seq
MIRT1405389 hsa-miR-140-3p CLIP-seq
MIRT1405390 hsa-miR-1915 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
EGR1 Activation 8195167
REST Unknown 21693630
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
43
GO ID Ontology Definition Evidence Reference
GO:0000795 Component Synaptonemal complex IEA
GO:0003779 Function Actin binding IEA
GO:0005515 Function Protein binding IPI 23406870
GO:0005524 Function ATP binding IEA
GO:0005524 Function ATP binding TAS 15217342
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
313440 11494 ENSG00000008056
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P17600
Protein name Synapsin-1 (Brain protein 4.1) (Synapsin I)
Protein function Neuronal phosphoprotein that coats synaptic vesicles, and binds to the cytoskeleton. Acts as a regulator of synaptic vesicles trafficking, involved in the control of neurotransmitter release at the pre-synaptic terminal (PubMed:21441247, PubMed:
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10581 Synapsin_N 1 32 Synapsin N-terminal Domain
PF02078 Synapsin 111 212 Synapsin, N-terminal domain Domain
PF02750 Synapsin_C 214 416 Synapsin, ATP binding domain Domain
Sequence
MNYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPA
ASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAASRVLLVID
EPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKP
DFVLIRQHAFSMARNGDYRSLVIGLQYAGIPS
VNSLHSVYNFCDKPWVFAQMVRLHKKLG
TEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKT
YATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTC
SEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQ
ALPR
QRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPP
LQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGP
GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGP
TRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQL
NKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFSD
Sequence length 705
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Serotonin Neurotransmitter Release Cycle
Dopamine Neurotransmitter Release Cycle
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Epilepsy Pathogenic rs2147912740 RCV004798924
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Epilepsy, X-linked 1, with variable learning disabilities and behavior disorders Pathogenic; Likely pathogenic rs2147912005, rs2147912333, rs2147927599, rs2147928664, rs2147912740, rs941190653, rs2147933505, rs2147913419, rs2147912165, rs2147912678, rs2147912440, rs923033810, rs2519712575, rs2519685866, rs2519686907
View all (31 more)
RCV001379126
RCV001378193
RCV001380293
RCV001388304
RCV001733750
View all (41 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Intellectual disability Likely pathogenic; Pathogenic rs2057891984 RCV001260825
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual disability, X-linked 50 Pathogenic; Likely pathogenic rs2147927599, rs941190653, rs2519686818, rs753517348, rs1556860638, rs2057891984, rs2057941303 RCV002246361
RCV001762014
RCV002508167
RCV004515771
RCV003313114
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Autism spectrum disorder Uncertain significance ClinVar
CTD
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DEPRESSIVE DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alzheimer Disease Alzheimer disease Pubtator 39863324 Associate
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 31830091
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 26096837, 29671924 Associate
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 21441247, 23818987, 24312498, 26096837, 28922833
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic behavior Autism HPO_DG
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism BEFREE 21441247, 23406870, 23956174, 28973667
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism Pubtator 31969655 Associate
★☆☆☆☆
Found in Text Mining only
Brain Diseases Brain disease Pubtator 26823711 Associate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 24083474
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 24083474 Associate
★☆☆☆☆
Found in Text Mining only