Gene Gene information from NCBI Gene database.
Entrez ID 6845
Gene name Vesicle associated membrane protein 7
Gene symbol VAMP7
Synonyms (NCBI Gene)
SYBL1TI-VAMPTIVAMPVAMP-7
Chromosome X|Y
Chromosome location Xq28 and Yq12
Summary This gene encodes a transmembrane protein that is a member of the soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) family. The encoded protein localizes to late endosomes and lysosomes and is involved in the fusion of transpor
miRNA miRNA information provided by mirtarbase database.
229
miRTarBase ID miRNA Experiments Reference
MIRT024077 hsa-miR-1-3p Proteomics 18668040
MIRT030255 hsa-miR-26b-5p Microarray 19088304
MIRT048872 hsa-miR-93-5p CLASH 23622248
MIRT1481882 hsa-miR-1248 CLIP-seq
MIRT1481883 hsa-miR-1271 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
61
GO ID Ontology Definition Evidence Reference
GO:0000149 Function SNARE binding IBA
GO:0005484 Function SNAP receptor activity IBA
GO:0005515 Function Protein binding IPI 16354670, 18775314, 26359495, 33845483, 34706264
GO:0005737 Component Cytoplasm IDA 18253931
GO:0005764 Component Lysosome IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300053 11486 ENSG00000124333
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P51809
Protein name Vesicle-associated membrane protein 7 (VAMP-7) (Synaptobrevin-like protein 1) (Tetanus-insensitive VAMP) (Ti-VAMP)
Protein function Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal
PDB 2DMW
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13774 Longin 29 108 Regulated-SNARE-like domain Domain
PF00957 Synaptobrevin 122 210 Synaptobrevin Family
Tissue specificity TISSUE SPECIFICITY: Detected in all tissues tested.
Sequence
Sequence length 220
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  SNARE interactions in vesicular transport   trans-Golgi Network Vesicle Budding
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Interleukin-12 signaling
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
10
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial cancer of breast Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Malignant tumor of urinary bladder Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis ORPHANET_DG 24880616
★☆☆☆☆
Found in Text Mining only
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis Orphanet
★☆☆☆☆
Found in Text Mining only
Ambiguous Genitalia Ambiguous Genitalia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety disorder Pubtator 33092533 Associate
★☆☆☆☆
Found in Text Mining only
Azoospermia Azoospermia HPO_DG
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar Disorder BEFREE 11840509
★☆☆☆☆
Found in Text Mining only
Borderline Personality Disorder Borderline personality disorder BEFREE 10898908
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 18571410
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 18571410 Associate
★☆☆☆☆
Found in Text Mining only
Bronchopulmonary Dysplasia Bronchopulmonary Dysplasia BEFREE 10898908
★☆☆☆☆
Found in Text Mining only