Gene Gene information from NCBI Gene database.
Entrez ID 6843
Gene name Vesicle associated membrane protein 1
Gene symbol VAMP1
Synonyms (NCBI Gene)
CMS25SAX1SPAX1SYB1VAMP-1
Chromosome 12
Chromosome location 12p13.31
Summary Synapotobrevins, syntaxins, and the synaptosomal-associated protein SNAP25 are the main components of a protein complex involved in the docking and/or fusion of synaptic vesicles with the presynaptic membrane. The protein encoded by this gene is a member
miRNA miRNA information provided by mirtarbase database.
248
miRTarBase ID miRNA Experiments Reference
MIRT710248 hsa-miR-6819-3p HITS-CLIP 19536157
MIRT710247 hsa-miR-6877-3p HITS-CLIP 19536157
MIRT710246 hsa-miR-877-3p HITS-CLIP 19536157
MIRT710245 hsa-miR-1266-3p HITS-CLIP 19536157
MIRT710244 hsa-miR-1236-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0005484 Function SNAP receptor activity IBA
GO:0005515 Function Protein binding IPI 9920726, 25416956, 32296183, 32814053
GO:0005739 Component Mitochondrion IEA
GO:0005741 Component Mitochondrial outer membrane IEA
GO:0005829 Component Cytosol IDA 11391393
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
185880 12642 ENSG00000139190
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P23763
Protein name Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin-1)
Protein function Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00957 Synaptobrevin 30 118 Synaptobrevin Family
Tissue specificity TISSUE SPECIFICITY: Nervous system, skeletal muscle and adipose tissue.
Sequence
Sequence length 118
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  SNARE interactions in vesicular transport   Toxicity of botulinum toxin type D (BoNT/D)
Toxicity of botulinum toxin type F (BoNT/F)
Toxicity of botulinum toxin type G (BoNT/G)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Houge-Janssens syndrome 2 Likely pathogenic rs1565527137 RCV005861168
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Myasthenic syndrome, congenital, 25, presynaptic Pathogenic; Likely pathogenic rs878854975, rs746220436, rs1565527239, rs1565527137, rs1565527140 RCV005008203
RCV000757907
RCV000757908
RCV000757910
RCV000757911
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Spastic ataxia 1 Likely pathogenic; Pathogenic rs1308616721, rs878854975, rs2540072817, rs746220436 RCV005409856
RCV000128446
RCV003320009
RCV002279727
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Spastic paraplegia Pathogenic; Likely pathogenic rs1311863343, rs1308616721, rs878854975, rs746220436 RCV001958880
RCV001982906
RCV002571516
RCV000233592
RCV001855899
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATAXIA, SPASTIC, 1, AUTOSOMAL DOMINANT CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT SPASTIC ATAXIA TYPE 1 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGEN MYASTHENIC SYNDROMES PRESYNAPTIC Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital myasthenic syndrome Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma LHGDN 18457912
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 25881291
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita HPO_DG
★☆☆☆☆
Found in Text Mining only
Ataxia Ataxia Pubtator 22958904 Associate
★☆☆☆☆
Found in Text Mining only
ATAXIA, SPASTIC, 1, AUTOSOMAL DOMINANT Ataxia ORPHANET_DG 22958904
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATAXIA, SPASTIC, 1, AUTOSOMAL DOMINANT Ataxia GENOMICS_ENGLAND_DG 22958904, 27957547
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATAXIA, SPASTIC, 1, AUTOSOMAL DOMINANT Ataxia CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATAXIA, SPASTIC, 1, AUTOSOMAL DOMINANT Ataxia CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autosomal dominant spastic ataxia type 1 Spastic Ataxia Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations