Gene Gene information from NCBI Gene database.
Entrez ID 6786
Gene name Stromal interaction molecule 1
Gene symbol STIM1
Synonyms (NCBI Gene)
D11S4896EGOKIMD10STRMKTAMTAM1
Chromosome 11
Chromosome location 11p15.4
Summary This gene encodes a type 1 transmembrane protein that mediates Ca2+ influx after depletion of intracellular Ca2+ stores by gating of store-operated Ca2+ influx channels (SOCs). It is one of several genes located in the imprinted gene domain of 11p15.5, an
SNPs SNP information provided by dbSNP.
18
SNP ID Visualize variation Clinical significance Consequence
rs140080199 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, 3 prime UTR variant
rs141215990 C>T Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant, missense variant
rs142239530 C>G,T Likely-pathogenic, uncertain-significance Coding sequence variant, missense variant, 3 prime UTR variant
rs201395930 C>A,T Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant
rs397514671 C>T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
209
miRTarBase ID miRNA Experiments Reference
MIRT020653 hsa-miR-155-5p Proteomics 18668040
MIRT032252 hsa-let-7b-5p Proteomics 18668040
MIRT050790 hsa-miR-17-3p CLASH 23622248
MIRT039069 hsa-miR-769-3p CLASH 23622248
MIRT482791 hsa-miR-6793-3p PAR-CLIP 23592263
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
AR Unknown 21432868
EGR1 Activation 20123987
WT1 Repression 20123987
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0002020 Function Protease binding IPI 25384971
GO:0002115 Process Store-operated calcium entry IBA
GO:0002115 Process Store-operated calcium entry IDA 19182790, 28219928
GO:0005246 Function Calcium channel regulator activity IBA
GO:0005246 Function Calcium channel regulator activity IDA 25326555, 26322679
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605921 11386 ENSG00000167323
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13586
Protein name Stromal interaction molecule 1
Protein function Acts as a Ca(2+) sensor that gates two major inward rectifying Ca(2+) channels at the plasma membrane: Ca(2+) release-activated Ca(2+) (CRAC) channels and arachidonate-regulated Ca(2+)-selective (ARC) channels (PubMed:15866891, PubMed:16005298,
PDB 2K60 , 2MAJ , 2MAK , 3TEQ , 4O9B , 6YEL
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07647 SAM_2 129 197 SAM domain (Sterile alpha motif) Domain
PF16533 SOAR 341 441 STIM1 Orai1-activating region Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed in various human primary cells and tumor cell lines. {ECO:0000269|PubMed:11004585, ECO:0000269|PubMed:11463338}.
Sequence
MDVCVRLALWLLWGLLLHQGQSLSHSHSEKATGTSSGANSEESTAAEFCRIDKPLCHSED
EKLSFEAVRNIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDL
WKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLK
MTDRSHRQKLQLKALDT
VLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEH
MKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRL
KELREGTENERSRQKYAEEELEQVREALRKAEKELESHSSWYAPEALQKWLQLTHEVEVQ
YYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVT
AALRERLHRWQQIEILCGFQI
VNNPGIHSLVAALNIDPSWMGSTRPNPAHFIMTDDVDDM
DEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHMSDRQRVAPKPPQM
SRAADEALNAMTSNGSHRLIEGVHPGSLVEKLPDSPALAKKALLALNHGLDKAHSLMELS
PSAPPGGSPHLDSSRSHSPSSPDPDTPSPVGDSRALQASRNTRIPHLAGKKAVAEEDNGS
IGEETDSSPGRKKFPLKIFKKPLKK
Sequence length 685
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Calcium signaling pathway
Platelet activation
  Ion homeostasis
Antigen activates B Cell Receptor (BCR) leading to generation of second messengers
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Combined immunodeficiency due to STIM1 deficiency Pathogenic; Likely pathogenic rs483352867, rs2133083597, rs2135736648, rs2135736277, rs2133224258, rs751733169, rs527236030, rs748277951, rs397515357, rs2497423187, rs2498405398, rs2498502151, rs2498479376, rs1057519506, rs397515390
View all (4 more)
RCV000850608
RCV001998195
RCV001891483
RCV002037722
RCV001956050
View all (14 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Myopathy with tubular aggregates Pathogenic; Likely pathogenic rs483352867, rs2133083597, rs2135736648, rs2135736277, rs2133224258, rs751733169, rs527236030, rs748277951, rs2497423187, rs2498405398, rs2498502151, rs2498479376, rs2497906029, rs397514671, rs397514675
View all (3 more)
RCV002228364
RCV001998195
RCV001891483
RCV002037722
RCV001956050
View all (13 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Myopathy, autophagic vacuolar, infantile-onset Likely pathogenic rs397515436 RCV004587609
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Myopathy, tubular aggregate, 1 Pathogenic; Likely pathogenic rs527236030, rs2133226731, rs748277951, rs397515436, rs2498479250, rs2093352256, rs397514675, rs397514676, rs397514677, rs1590688717 RCV000144069
RCV002226987
RCV000169764
RCV003482488
RCV003983756
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHRITIS, JUVENILE CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 15495192, 25428221
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 31050811
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 26022158
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 26543234
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 24583265
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Endometrioid Endometrial Cancer BEFREE 21547354
★☆☆☆☆
Found in Text Mining only
Adrenoleukodystrophy Adrenoleukodystrophy BEFREE 29704510
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 15495192, 25428221
★☆☆☆☆
Found in Text Mining only
Adult Acute Myeloblastic Leukemia Myeloblastic Leukemia BEFREE 15170169
★☆☆☆☆
Found in Text Mining only
Adult Hepatocellular Carcinoma Liver carcinoma BEFREE 24842273
★☆☆☆☆
Found in Text Mining only