Gene Gene information from NCBI Gene database.
Entrez ID 6718
Gene name Aldo-keto reductase family 1 member D1
Gene symbol AKR1D1
Synonyms (NCBI Gene)
3o5bredCBAS2SRD5B1
Chromosome 7
Chromosome location 7q33
Summary The enzyme encoded by this gene is responsible for the catalysis of the 5-beta-reduction of bile acid intermediates and steroid hormones carrying a delta(4)-3-one structure. Deficiency of this enzyme may contribute to hepatic dysfunction. Three transcript
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs121918342 C>T Pathogenic, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs121918343 C>T Pathogenic Missense variant, coding sequence variant
rs187887082 T>C Likely-pathogenic, uncertain-significance Missense variant, coding sequence variant
rs201988060 G>A,C,T Likely-pathogenic, uncertain-significance Splice donor variant
rs267606649 C>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
147
miRTarBase ID miRNA Experiments Reference
MIRT024083 hsa-miR-1-3p Microarray 18668037
MIRT716455 hsa-miR-1298-5p HITS-CLIP 19536157
MIRT716454 hsa-miR-670-3p HITS-CLIP 19536157
MIRT716453 hsa-miR-335-3p HITS-CLIP 19536157
MIRT629357 hsa-miR-6890-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0004032 Function Aldose reductase (NADPH) activity IBA
GO:0005496 Function Steroid binding TAS 7508385
GO:0005515 Function Protein binding IPI 28514442, 33961781
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604741 388 ENSG00000122787
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P51857
Protein name Aldo-keto reductase family 1 member D1 (EC 1.3.1.3) (3-oxo-5-beta-steroid 4-dehydrogenase) (Delta(4)-3-ketosteroid 5-beta-reductase) (Delta(4)-3-oxosteroid 5-beta-reductase)
Protein function Catalyzes the stereospecific NADPH-dependent reduction of the C4-C5 double bond of bile acid intermediates and steroid hormones carrying a delta(4)-3-one structure to yield an A/B cis-ring junction. This cis-configuration is crucial for bile aci
PDB 3BUR , 3BUV , 3BV7 , 3CAQ , 3CAS , 3CAV , 3CMF , 3COT , 3DOP , 3G1R , 3UZW , 3UZX , 3UZY , 3UZZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00248 Aldo_ket_red 20 304 Aldo/keto reductase family Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in liver. Expressed in testis and weakly in colon. {ECO:0000269|PubMed:11342103}.
Sequence
Sequence length 326
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Primary bile acid biosynthesis
Steroid hormone biosynthesis
Metabolic pathways
  Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
Synthesis of bile acids and bile salts via 24-hydroxycholesterol
Synthesis of bile acids and bile salts via 27-hydroxycholesterol
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
11
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
AKR1D1-related disorder Likely pathogenic rs2536095242, rs749744865 RCV003400357
RCV003962710
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital bile acid synthesis defect Likely pathogenic; Pathogenic rs267606650 RCV004798717
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital bile acid synthesis defect 2 Likely pathogenic; Pathogenic rs182820353, rs749224036, rs759908186, rs121918343, rs267606650, rs1337598962, rs1433614577, rs1315777461, rs1236669456, rs770247815 RCV001374413
RCV003227972
RCV001785905
RCV000005707
RCV000005709
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BILE ACID SYNTHESIS DEFECT, CONGENITAL, 2 CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL BILE ACID SYNTHESIS DEFECT TYPE 2 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial cancer of breast Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adrenoleukodystrophy Adrenoleukodystrophy Pubtator 30544401 Associate
★☆☆☆☆
Found in Text Mining only
Amino Acid Metabolism Inborn Errors Amino acid metabolism disorder Pubtator 31337596 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 28413214 Associate
★☆☆☆☆
Found in Text Mining only
Bile Acid Malabsorption Primary Bile acid malabsorption Pubtator 23323017, 23679950, 26418565 Associate
★☆☆☆☆
Found in Text Mining only
Bile acid synthesis defect congenital 1 Congenital bile acid synthesis defect Pubtator 35758383 Associate
★☆☆☆☆
Found in Text Mining only
Bile acid synthesis defect congenital 2 Congenital bile acid synthesis defect Pubtator 23323017, 31337596, 35758383, 36739965, 38062451 Associate
★☆☆☆☆
Found in Text Mining only
Bile acid synthesis defect congenital 4 Congenital bile acid synthesis defect Pubtator 36739965 Associate
★☆☆☆☆
Found in Text Mining only
Bile acid synthesis defect, congenital, 2 Bile acid synthesis defect ORPHANET_DG 12970144
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bile acid synthesis defect, congenital, 2 Bile acid synthesis defect UNIPROT_DG 12970144, 15030995, 19175828, 20522910
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bile acid synthesis defect, congenital, 2 Bile acid synthesis defect GENOMICS_ENGLAND_DG 12970144, 24816252
★★☆☆☆
Found in Text Mining + Unknown/Other Associations