Gene Gene information from NCBI Gene database.
Entrez ID 6708
Gene name Spectrin alpha, erythrocytic 1
Gene symbol SPTA1
Synonyms (NCBI Gene)
EL2HPPHS3SPH3SPTA
Chromosome 1
Chromosome location 1q23.1
Summary This gene encodes a member of a family of molecular scaffold proteins that link the plasma membrane to the actin cytoskeleton and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. The enco
SNPs SNP information provided by dbSNP.
43
SNP ID Visualize variation Clinical significance Consequence
rs857716 C>A,G,T Likely-benign, likely-pathogenic, conflicting-interpretations-of-pathogenicity Intron variant, genic downstream transcript variant
rs857725 T>A,C,G Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant, missense variant, genic downstream transcript variant, stop gained, coding sequence variant, non coding transcript variant
rs2022057 G>A,T Likely-benign, benign, likely-pathogenic Non coding transcript variant, stop gained, coding sequence variant, synonymous variant
rs3737515 G>A,C Likely-benign, benign-likely-benign, likely-pathogenic Coding sequence variant, synonymous variant, intron variant, genic downstream transcript variant, missense variant
rs7418956 G>A,T Pathogenic, likely-benign, benign Coding sequence variant, non coding transcript variant, synonymous variant, missense variant
miRNA miRNA information provided by mirtarbase database.
189
miRTarBase ID miRNA Experiments Reference
MIRT022113 hsa-miR-124-3p Microarray 18668037
MIRT610630 hsa-miR-8485 HITS-CLIP 22927820
MIRT610628 hsa-miR-15a-3p HITS-CLIP 22927820
MIRT610627 hsa-miR-4529-5p HITS-CLIP 22927820
MIRT610630 hsa-miR-8485 HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
39
GO ID Ontology Definition Evidence Reference
GO:0002260 Process Lymphocyte homeostasis IEA
GO:0003779 Function Actin binding IEA
GO:0005200 Function Structural constituent of cytoskeleton IEA
GO:0005200 Function Structural constituent of cytoskeleton TAS 1634521
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
182860 11272 ENSG00000163554
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P02549
Protein name Spectrin alpha chain, erythrocytic 1 (Erythroid alpha-spectrin)
Protein function Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane.
PDB 1OWA , 3LBX , 5J4O
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00435 Spectrin 53 156 Spectrin repeat Domain
PF00435 Spectrin 158 262 Spectrin repeat Domain
PF00435 Spectrin 264 368 Spectrin repeat Domain
PF00435 Spectrin 370 474 Spectrin repeat Domain
PF00435 Spectrin 476 580 Spectrin repeat Domain
PF00435 Spectrin 582 685 Spectrin repeat Domain
PF00435 Spectrin 687 791 Spectrin repeat Domain
PF00435 Spectrin 793 897 Spectrin repeat Domain
PF00435 Spectrin 899 979 Spectrin repeat Domain
PF00018 SH3_1 983 1028 SH3 domain Domain
PF00435 Spectrin 1082 1181 Spectrin repeat Domain
PF00435 Spectrin 1183 1287 Spectrin repeat Domain
PF00435 Spectrin 1289 1393 Spectrin repeat Domain
PF00435 Spectrin 1395 1498 Spectrin repeat Domain
PF00435 Spectrin 1500 1605 Spectrin repeat Domain
PF00435 Spectrin 1607 1711 Spectrin repeat Domain
PF00435 Spectrin 1713 1817 Spectrin repeat Domain
PF00435 Spectrin 1819 1926 Spectrin repeat Domain
PF00435 Spectrin 1928 2033 Spectrin repeat Domain
PF00435 Spectrin 2043 2147 Spectrin repeat Domain
PF00435 Spectrin 2157 2258 Spectrin repeat Domain
PF08726 EFhand_Ca_insen 2350 2418 Ca2+ insensitive EF hand Domain
Sequence
MEQFPKETVVESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR
DADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT
MGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLR
ALKFQQYVQECADILEWIGDKEAI
ATSVELGEDWERTEVLHKKFEDFQVELVAKEGRVVEVNQYANECAEENHPDLPLIQSKQN
EVNAAWERLRGLALQRQKALSN
AANLQRFKRDVTEAIQWIKEKEPVLTSEDYGKDLVASE
GLFHSHKGLERNLAVMSDKVKELCAKAEKLTLSHPSDAPQIQEMKEDLVSSWEHIRALAT
SRYEKLQA
TYWYHRFSSDFDELSGWMNEKTAAINADELPTDVAGGEVLLDRHQQHKHEID
SYDDRFQSADETGQDLVNANHEASDEVREKMEILDNNWTALLELWDERHRQYEQ
CLDFHL
FYRDSEQVDSWMSRQEAFLENEDLGNSLGSAEALLQKHEDFEEAFTAQEEKIITVDKTAT
KLIGDDHYDSENIKAIRDGLLARRDALREKAATRRRLLKE
SLLLQKLYEDSDDLKNWINK
KKKLADDEDYKDIQNLKSRVQKQQVFEKELAVNKTQLENIQKTGQEMIEGGHYASDNVTT
RLSEVASLWEELLEATKQKGTQLHE
ANQQLQFENNAEDLQRWLEDVEWQVTSEDYGKGLA
EVQNRLRKHGLLESAVAARQDQVDILTDLAAYFEEIGHPDSKDIRARQESLVCRFEALKE
PLATRKKKLLD
LLHLQLICRDTEDEEAWIQETEPSATSTYLGKDLIASKKLLNRHRVILE
NIASHEPRIQEITERGNKMVEEGHFAAEDVASRVKSLNQNMESLRARAARRQNDLEA
NVQ
FQQYLADLHEAETWIREKEPIVDNTNYGADEEAAGALLKKHEAFLLDLNSFGDSMKALRN
QANACQQQQAAPVEGVAGE
QRVMALYDFQARSPREVTMKKGDVLTLLSSINKDWWKVEAA
DHQGIVPA
VYVRRLAHDEFPMLPQRRREEPGNITQRQEQIENQYRSLLDRAEERRRRLLQ
RYNEFLLAYEAGDMLEWIQEKKAENTGVELDDVWELQKKFDEFQKDLNTNEPRLRDINKV
ADDLLFEGLLTPEGAQIRQELNSRWGSLQRLADEQRQLLGS
AHAVEVFHREADDTKEQIE
KKCQALSAADPGSDLFSVQALQRRHEGFERDLVPLGDKVTILGETAERLSESHPDATEDL
QRQKMELNEAWEDLQGRTKDRKESLNE
AQKFYLFLSKARDLQNWISSIGGMVSSQELAED
LTGIEILLERHQEHRADMEAEAPTFQALEDFSAELIDSGHHASPEIEKKLQAVKLERDDL
EKAWEKRKKILDQ
CLELQMFQGNCDQVESWMVARENSLRSDDKSSLDSLEALMKKRDDLD
KAITAQEGKITDLEHFAESLIADEHYAKEEIATRLQRVLDRWKALKAQLIDERTKLGD
YA
NLKQFYRDLEELEEWISEMLPTACDESYKDATNIQRKYLKHQTFAHEVDGRSEQVHGVIN
LGNSLIECSACDGNEEAMKEQLEQLKEHWDHLLERTNDKGKKLNE
ASRQQRFNTSIRDFE
FWLSEAETLLAMKDQARDLASAGNLLKKHQLLEREMLAREDALKDLNTLAEDLLSSGTFN
VDQIVKKKDNVNKRFLNVQELAAAHHEKLKE
AYALFQFFQDLDDEESWIEEKLIRVSSQD
YGRDLQGVQNLLKKHKRLEGELVAHEPAIQNVLDMAEKLKDKAAVGQEEIQLRLAQFVEH
WEKLKELAKARGLKLEE
SLEYLQFMQNAEEEEAWINEKNALAVRGDCGDTLAATQSLLMK
HEALENDFAVHETRVQNVCAQGEDILNKVLQEESQNKEISSKIEALNEKTPSLAKAIAAW
KLQLED
DYAFQEFNWKADVVEAWIADKETSLKTNGNGADLGDFLTLLAKQDTLDASLQSF
QQERLPEITDLKDKLISAQHNQSKAIEERYAALLKRWEQLLEASAVHRQKLLE
KQLPLQK
AEDLFVEFAHKASALNNWCEKMEENLSEPVHCVSLNEIRQLQKDHEDFLASLARAQADFK
CLLELDQQIKALGVPSSPYTWLTVEVLERTWKHLSDIIEEREQELQK
EEARQVKNFEMCQ
EFEQNASTFLQWILETRAYFLDGSLLKETGTLESQLEANKRKQKEIQAMKRQLTKIVDLG
DNLEDALILDIKYSTIGLAQQWDQLYQLGLRMQHNLEQ
QIQAKDIKGVSEETLKEFSTIY
KHFDENLTGRLTHKEFRSCLRGLNYYLPMVEEDEHEPKFEKFLDAVDPGRKGYVSLEDYT
AFLIDKESENIKSSDEIENAFQALAEGKSYITKEDMKQALTPEQVSFCATHMQQYMDPRG
RSHLSGYDYVGFTNSYFG
N
Sequence length 2419
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    NCAM signaling for neurite out-growth
Interaction between L1 and Ankyrins
RAF/MAP kinase cascade
COPI-mediated anterograde transport
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
29
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of blood and blood-forming tissues Likely pathogenic rs773168610 RCV001814566
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Anemia Likely pathogenic rs774632615 RCV001003796
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Elliptocytosis 2 Likely pathogenic; Pathogenic rs1649424538, rs1652590413, rs1651716612, rs121918634, rs121918637, rs121918638, rs121918640, rs121918641, rs121918642, rs863223305, rs1394141324, rs1035389616, rs751026146, rs200830867 RCV001332233
RCV001332228
RCV001843829
RCV000013697
RCV000013703
View all (11 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Familial hemolytic anemia Likely pathogenic; Pathogenic rs1462060431, rs1553231217 RCV000655916
RCV000655921
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, HEMOLYTIC Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, HEMOLYTIC, CONGENITAL Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Elliptocytosis Conflicting classifications of pathogenicity; Uncertain significance; Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acromegaly Acromegaly Pubtator 40415137 Associate
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 32345668 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 2568862 Associate
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Anemia Anemia BEFREE 28090778
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Anemia Hemolytic Hemolytic anemia Pubtator 35650129 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Congenital Hemolytic anemia Pubtator 37697358 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Sickle Cell Sickle cell anemia Pubtator 19650141 Associate
★☆☆☆☆
Found in Text Mining only
Anemia, Hemolytic Anemia LHGDN 18815189, 19008453
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia, Hemolytic Anemia HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia, Hemolytic, Congenital Anemia BEFREE 29936674
★★☆☆☆
Found in Text Mining + Unknown/Other Associations