Gene Gene information from NCBI Gene database.
Entrez ID 6664
Gene name SRY-box transcription factor 11
Gene symbol SOX11
Synonyms (NCBI Gene)
CSS9IDDMOHMRD27
Chromosome 2
Chromosome location 2p25.2
Summary This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulato
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs1057518187 C>A Pathogenic Coding sequence variant, stop gained
rs1057518282 GCGGCGGC>- Likely-pathogenic Coding sequence variant, frameshift variant
rs1057518672 G>A Pathogenic Coding sequence variant, stop gained
rs1553327863 A>T Likely-pathogenic Stop gained, coding sequence variant
rs1553327954 C>A Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
540
miRTarBase ID miRNA Experiments Reference
MIRT019474 hsa-miR-148b-3p Microarray 17612493
MIRT022064 hsa-miR-128-3p Microarray 17612493
MIRT042780 hsa-miR-339-5p CLASH 23622248
MIRT053649 hsa-miR-145-5p Microarray 22942087
MIRT053725 hsa-miR-221-3p Microarray 22942087
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
96
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 19808959
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600898 11191 ENSG00000176887
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P35716
Protein name Transcription factor SOX-11
Protein function Transcription factor that acts as a transcriptional activator (PubMed:24886874, PubMed:26543203). Binds cooperatively with POU3F2/BRN2 or POU3F1/OCT6 to gene promoters, which enhances transcriptional activation (By similarity). Acts as a transcr
PDB 6T78 , 6T7A , 6T7C , 6T7D
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00505 HMG_box 49 117 HMG (high mobility group) box Domain
Tissue specificity TISSUE SPECIFICITY: Expressed primarily in the brain and heart, with low expression in the kidney, pancreas and muscle. {ECO:0000269|PubMed:24886874}.
Sequence
MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWS
KIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYK
YRP
RKKPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKA
GAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQIK
QEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVRAG
ATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADD
LMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTPE
LSEMIAGDWLEANFSDLVFTY
Sequence length 441
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
14
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Craniosynostosis syndrome Likely pathogenic rs2103276364 RCV001849680
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypogonadotropic hypogonadism Pathogenic; Likely pathogenic rs1252447458, rs2465088616, rs2465087457, rs1064794628, rs2465087534 RCV004586392
RCV004586397
RCV004586398
RCV004586399
RCV004586400
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Intellectual developmental disorder with microcephaly and with or without ocular malformations or hypogonadotropic hypogonadism Likely pathogenic; Pathogenic rs780122780, rs2103276330, rs2103276338, rs1441654871, rs1553327809, rs2103276750, rs587777480, rs2103276337, rs2103276340, rs1064794702, rs2465087401, rs2465087380, rs2465087455, rs2103276364, rs1306957190
View all (25 more)
RCV001331021
RCV003150828
RCV003150829
RCV001775379
RCV001806379
View all (43 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
SOX11-related disorder Likely pathogenic rs1064794702, rs1215459755, rs2465087382 RCV004731258
RCV003894420
RCV003959061
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CARCINOMA, ADENOID CYSTIC CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC KIDNEY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC OBSTRUCTIVE PULMONARY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Coffin-Siris syndrome Conflicting classifications of pathogenicity ClinVar
CTD, Disgenet, GWAS catalog, Orphanet
CTD, Disgenet, GWAS catalog, Orphanet
CTD, Disgenet, GWAS catalog, Orphanet
CTD, Disgenet, GWAS catalog, Orphanet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 19880779
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 30221780
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 29315911
★☆☆☆☆
Found in Text Mining only
Adenoid Cystic Carcinoma Adenocarcinoma CTD_human_DG 16762588
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 12125983, 18577562
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 26578390
★☆☆☆☆
Found in Text Mining only
Apraxia oculomotor Cogan type Apraxia Pubtator 33785884 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma Pubtator 34995380 Associate
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma BEFREE 23619925, 30221780
★☆☆☆☆
Found in Text Mining only
Astrocytoma Astrocytoma Pubtator 23619925 Associate
★☆☆☆☆
Found in Text Mining only