Gene Gene information from NCBI Gene database.
Entrez ID 6663
Gene name SRY-box transcription factor 10
Gene symbol SOX10
Synonyms (NCBI Gene)
DOMPCWHSOX-10WS2EWS4WS4C
Chromosome 22
Chromosome location 22q13.1
Summary This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional activator after for
miRNA miRNA information provided by mirtarbase database.
13
miRTarBase ID miRNA Experiments Reference
MIRT1380109 hsa-miR-1273 CLIP-seq
MIRT1380110 hsa-miR-1293 CLIP-seq
MIRT1380111 hsa-miR-1908 CLIP-seq
MIRT1380112 hsa-miR-4483 CLIP-seq
MIRT1380113 hsa-miR-4486 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SOX9 Repression 15896776
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
76
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000785 Component Chromatin IEA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000976 Function Transcription cis-regulatory region binding ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602229 11190 ENSG00000100146
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P56693
Protein name Transcription factor SOX-10
Protein function Transcription factor that plays a central role in developing and mature glia (By similarity). Specifically activates expression of myelin genes, during oligodendrocyte (OL) maturation, such as DUSP15 and MYRF, thereby playing a central role in o
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12444 Sox_N 12 93 Sox developmental protein N terminal Family
PF00505 HMG_box 104 172 HMG (high mobility group) box Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in fetal brain and in adult brain, heart, small intestine and colon.
Sequence
MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVR
VNGASKSKPHVKRPMNAFMVWAQAARR
KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYK
YQPRRRKN
GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT
PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY
LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG
LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
Sequence length 466
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    EGR2 and SOX10-mediated initiation of Schwann cell myelination
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
40
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Aganglionic megacolon Likely pathogenic rs760539449 RCV000736047
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deafness with anatomical inner ear anomalies Likely pathogenic; Pathogenic rs2145768544, rs2518052342 RCV003155439
RCV003155595
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hirschsprung disease, susceptibility to, 1 Likely pathogenic rs606231342 RCV000144844
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypogonadism with anosmia Pathogenic rs1601887036, rs1932477493 RCV004794473
RCV001249445
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Charcot-Marie-Tooth disease Conflicting classifications of pathogenicity; Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
DEAF BLIND HYPOPIGMENTATION SYNDROME, YEMENITE TYPE GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EARLY ONSET SCHIZOPHRENIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hearing impairment Conflicting classifications of pathogenicity ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
46, XX Testicular Disorders of Sex Development 46, XX Gonadal Sex Reversal BEFREE 19933217
★☆☆☆☆
Found in Text Mining only
46,XX SEX REVERSAL 4 46, XX Gonadal Sex Reversal BEFREE 15108202
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30628926
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Clear Cell Adenocarcinoma BEFREE 27327192
★☆☆☆☆
Found in Text Mining only
Adenoid Cystic Carcinoma Adenocarcinoma BEFREE 27084744, 28216417, 28343365, 28394798, 31105427, 31128548
★☆☆☆☆
Found in Text Mining only
Adult Malignant Peripheral Nerve Sheath Tumor Malignant Peripheral Nerve Sheath Tumor BEFREE 23929265
★☆☆☆☆
Found in Text Mining only
Aganglionosis, Colonic Colonic Aganglionosis BEFREE 11685702
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum BEFREE 23799842, 27084744, 28216417, 28500913
★☆☆☆☆
Found in Text Mining only
Alacrima Alacrima HPO_DG
★☆☆☆☆
Found in Text Mining only
Ameloblastoma Ameloblastoma Pubtator 31895100, 37628576 Associate
★☆☆☆☆
Found in Text Mining only