Gene Gene information from NCBI Gene database.
Entrez ID 6647
Gene name Superoxide dismutase 1
Gene symbol SOD1
Synonyms (NCBI Gene)
ALSALS1HEL-S-44IPOASODSTAHPhSod1homodimer
Chromosome 21
Chromosome location 21q22.11
Summary The protein encoded by this gene binds copper and zinc ions and is one of two isozymes responsible for destroying free superoxide radicals in the body. The encoded isozyme is a soluble cytoplasmic protein, acting as a homodimer to convert naturally-occuri
SNPs SNP information provided by dbSNP.
30
SNP ID Visualize variation Clinical significance Consequence
rs11556620 A>G,T Likely-pathogenic Missense variant, coding sequence variant
rs74315452 T>C Pathogenic Missense variant, coding sequence variant
rs76731700 G>A,T Pathogenic, likely-pathogenic Missense variant, coding sequence variant, stop gained
rs80265967 A>C,T Pathogenic, conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, coding sequence variant
rs121912431 G>A,C Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
164
miRTarBase ID miRNA Experiments Reference
MIRT000992 hsa-miR-377-3p Luciferase reporter assayWestern blot 18716028
MIRT000992 hsa-miR-377-3p Luciferase reporter assay 21203553
MIRT048056 hsa-miR-197-3p CLASH 23622248
MIRT043913 hsa-miR-378a-3p CLASH 23622248
MIRT734538 hsa-miR-6823-5p Western blottingqRT-PCR 33649776
Transcription factors Transcription factors information provided by TRRUST V2 database.
9
Transcription factor Regulation Reference
CEBPD Activation 20385105
EGR1 Activation 9867871
KLF4 Repression 23370975
MSX2 Activation 22824755
MTF1 Activation 15378601
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
158
GO ID Ontology Definition Evidence Reference
GO:0000302 Process Response to reactive oxygen species IEA
GO:0000303 Process Response to superoxide IDA 16790527
GO:0000303 Process Response to superoxide IEA
GO:0001541 Process Ovarian follicle development IEA
GO:0001541 Process Ovarian follicle development ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
147450 11179 ENSG00000142168
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P00441
Protein name Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) (Superoxide dismutase 1) (hSod1)
Protein function Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
PDB 1AZV , 1BA9 , 1DSW , 1FUN , 1HL4 , 1HL5 , 1KMG , 1L3N , 1MFM , 1N18 , 1N19 , 1OEZ , 1OZT , 1OZU , 1P1V , 1PTZ , 1PU0 , 1RK7 , 1SOS , 1SPD , 1UXL , 1UXM , 2AF2 , 2C9S , 2C9U , 2C9V , 2GBT , 2GBU , 2GBV , 2LU5 , 2MP3 , 2NAM , 2NNX , 2R27 , 2V0A , 2VR6 , 2VR7 , 2VR8 , 2WKO , 2WYT , 2WYZ , 2WZ0 , 2WZ5 , 2WZ6 , 2XJK , 2XJL , 2ZKW , 2ZKX , 2ZKY , 3CQP , 3CQQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00080 Sod_Cu 9 150 Copper/zinc superoxide dismutase (SODC) Domain
Sequence
Sequence length 154
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Peroxisome
Longevity regulating pathway - multiple species
Parkinson disease
Amyotrophic lateral sclerosis
Huntington disease
Prion disease
Pathways of neurodegeneration - multiple diseases
Chemical carcinogenesis - reactive oxygen species
  Platelet degranulation
Detoxification of Reactive Oxygen Species
Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
79
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal central motor function Likely pathogenic rs121912445 RCV001813991
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Amyotrophic lateral sclerosis Likely pathogenic; Pathogenic rs2123437030, rs121912443, rs76731700, rs1378590183 RCV001843934
RCV001843454
RCV001843542
RCV000857231
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Amyotrophic lateral sclerosis 1, autosomal recessive Likely pathogenic rs121912445 RCV000015890
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Amyotrophic lateral sclerosis type 1 Likely pathogenic; Pathogenic rs1568809169, rs1568810316, rs1027128618, rs1568810715, rs1568811366, rs121912438, rs1568811454, rs1280042397, rs1131690781, rs1555836169, rs121912453, rs1424014997, rs1568807400, rs1457889952, rs1312702973
View all (64 more)
RCV001318269
RCV001332469
RCV001374388
RCV001377993
RCV001378934
View all (91 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Adult onset neurodegenerative disorder Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMYOTROPHIC LATERAL SCLEROSIS 1 CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMYOTROPHIC LATERAL SCLEROSIS 10 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amyotrophic Lateral Sclerosis, Dominant Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acne Acne BEFREE 31448393
★☆☆☆☆
Found in Text Mining only
Acromegaly Acromegaly Pubtator 29046499 Associate
★☆☆☆☆
Found in Text Mining only
Acute Cerebrovascular Accidents Stroke CTD_human_DG 10698074
★☆☆☆☆
Found in Text Mining only
Acute Kidney Insufficiency Acute Kidney Insufficiency CTD_human_DG 28885000
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 30914000
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 17823119
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 12447480, 17056476
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 17409931
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 28808400
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 21930909
★☆☆☆☆
Found in Text Mining only