Gene Gene information from NCBI Gene database.
Entrez ID 6616
Gene name Synaptosome associated protein 25
Gene symbol SNAP25
Synonyms (NCBI Gene)
CMS18DEE117RIC-4RIC4SEC9SNAPSNAP-25SUPbA416N4.2dJ1068F16.2
Chromosome 20
Chromosome location 20p12.2
Summary Synaptic vesicle membrane docking and fusion is mediated by SNAREs (soluble N-ethylmaleimide-sensitive factor attachment protein receptors) located on the vesicle membrane (v-SNAREs) and the target membrane (t-SNAREs). The assembled v-SNARE/t-SNARE comple
SNPs SNP information provided by dbSNP.
3
SNP ID Visualize variation Clinical significance Consequence
rs797044873 G>T Likely-pathogenic Missense variant, coding sequence variant
rs1555794286 T>A Pathogenic Intron variant, coding sequence variant, missense variant
rs1600807788 G>C Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
326
miRTarBase ID miRNA Experiments Reference
MIRT438002 hsa-miR-641 Luciferase reporter assay 24391914
MIRT438002 hsa-miR-641 Luciferase reporter assay 24391914
MIRT438002 hsa-miR-641 Luciferase reporter assay 24391914
MIRT438002 hsa-miR-641 Luciferase reporter assay 24391914
MIRT438002 hsa-miR-641 Luciferase reporter assay 24391914
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SP1 Unknown 18194215
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
66
GO ID Ontology Definition Evidence Reference
GO:0000149 Function SNARE binding IEA
GO:0001504 Process Neurotransmitter uptake NAS 8760387
GO:0001917 Component Photoreceptor inner segment IEA
GO:0005249 Function Voltage-gated potassium channel activity IEA
GO:0005484 Function SNAP receptor activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600322 11132 ENSG00000132639
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P60880
Protein name Synaptosomal-associated protein 25 (SNAP-25) (Super protein) (SUP) (Synaptosomal-associated 25 kDa protein)
Protein function t-SNARE involved in the molecular regulation of neurotransmitter release. May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion. Regulates plasm
PDB 1KIL , 1XTG , 2N1T , 3DDA , 3DDB , 3RK2 , 3RK3 , 3RL0 , 3ZUR , 5W7I , 5W7J , 6JLH , 8BAN , 8BAV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00835 SNAP-25 91 141 SNAP-25 family Family
Tissue specificity TISSUE SPECIFICITY: Neurons of the neocortex, hippocampus, piriform cortex, anterior thalamic nuclei, pontine nuclei, and granule cells of the cerebellum.
Sequence
MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARV
VDEREQMAISGGFIRRVTNDA
RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR
IMEKADSNKTRIDEANQRATKMLGSG
Sequence length 206
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Synaptic vesicle cycle
Insulin secretion
  Serotonin Neurotransmitter Release Cycle
Norepinephrine Neurotransmitter Release Cycle
Glutamate Neurotransmitter Release Cycle
Dopamine Neurotransmitter Release Cycle
Acetylcholine Neurotransmitter Release Cycle
Other interleukin signaling
Toxicity of botulinum toxin type A (BoNT/A)
Toxicity of botulinum toxin type C (BoNT/C)
Toxicity of botulinum toxin type E (BoNT/E)
Neutrophil degranulation
GABA synthesis, release, reuptake and degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
47
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital myasthenic syndrome 18 Likely pathogenic; Pathogenic rs2064355563, rs2123063830, rs2123120544, rs2123159234, rs2123159470, rs2123120184, rs2514853451, rs2514785213, rs1555794286, rs2514853517, rs2514853315, rs2514853554, rs1600807788, rs2064355122 RCV001377079
RCV005414276
RCV005414277
RCV005414278
RCV005414279
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental and epileptic encephalopathy Likely pathogenic; Pathogenic rs2064355563, rs2123063802, rs2123063830, rs2123063984, rs2123120184, rs2123120544, rs2123159234, rs2123159261, rs2123159524, rs2123205099, rs2123205311, rs2123003858, rs2123019421, rs2123159470, rs797044873
View all (2 more)
RCV001706731
RCV001706735
RCV001706873
RCV001706874
RCV001706875
View all (12 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental and epileptic encephalopathy, 2 Pathogenic rs2123205311 RCV002286496
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Epilepsy with generalized tonic-clonic seizures Likely pathogenic rs797044873 RCV000190683
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIPOLAR DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIPOLAR I DISORDER, MOST RECENT EPISODE MANIC Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute Inflammatory Demyelinating Polyneuropathy Inflammatory Demyelinating Polyneuropathy BEFREE 29940481
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 17471166, 20470859, 25812605, 28000876, 30380185
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 21303427
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 11280778
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma LHGDN 18457912
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 18633321
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 31705888
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 20470859, 25812605, 28000876, 30380185
★☆☆☆☆
Found in Text Mining only
Adult Hodgkin Lymphoma Hodgkin Lymphoma BEFREE 11004694
★☆☆☆☆
Found in Text Mining only