Gene Gene information from NCBI Gene database.
Entrez ID 6607
Gene name Survival of motor neuron 2, centromeric
Gene symbol SMN2
Synonyms (NCBI Gene)
BCD541C-BCD541GEMIN1SMNCTDRD16B
Chromosome 5
Chromosome location 5q13.2
Summary This gene is part of a 500 kb inverted duplication on chromosome 5q13. This duplicated region contains at least four genes and repetitive elements which make it prone to rearrangements and deletions. The repetitiveness and complexity of the sequence have
miRNA miRNA information provided by mirtarbase database.
191
miRTarBase ID miRNA Experiments Reference
MIRT028415 hsa-miR-30a-5p Proteomics 18668040
MIRT029070 hsa-miR-26b-5p Microarray 19088304
MIRT045172 hsa-miR-186-5p CLASH 23622248
MIRT044885 hsa-miR-193a-3p CLASH 23622248
MIRT644923 hsa-miR-660-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000245 Process Spliceosomal complex assembly IMP 9845364
GO:0000245 Process Spliceosomal complex assembly NAS 9323129
GO:0000375 Process RNA splicing, via transesterification reactions IEA
GO:0000387 Process Spliceosomal snRNP assembly EXP 12067652
GO:0000387 Process Spliceosomal snRNP assembly IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601627 11118 ENSG00000205571
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    snRNP Assembly
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
12
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Kugelberg-Welander disease Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PROXIMAL SPINAL MUSCULAR ATROPHY TYPE 1 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PROXIMAL SPINAL MUSCULAR ATROPHY TYPE 2 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PROXIMAL SPINAL MUSCULAR ATROPHY TYPE 3 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Medulloblastoma Medulloblastoma BEFREE 24190638
★☆☆☆☆
Found in Text Mining only
Alpers Syndrome (disorder) Alpers Syndrome BEFREE 30522974
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 30347409
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 12427907, 16093455, 16931506, 19922137, 20840067, 21708901, 22249462, 22274580, 22323753, 23022481, 23255347, 24210254, 24803543, 24809826, 25625564
View all (8 more)
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 22274580, 24809826, 39506867 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic lateral sclerosis 1 Amyotrophic lateral sclerosis Pubtator 22187232 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis, Sporadic Lateral Sclerosis BEFREE 22187232, 24630593
★☆☆☆☆
Found in Text Mining only
Amyotrophy, monomelic Monomelic Amyotrophy BEFREE 15642858, 17850955
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 23521898
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 29660218
★☆☆☆☆
Found in Text Mining only