Gene Gene information from NCBI Gene database.
Entrez ID 6606
Gene name Survival of motor neuron 1, telomeric
Gene symbol SMN1
Synonyms (NCBI Gene)
BCD541GEMIN1SMASMA1SMA2SMA3SMA4SMA@SMNSMNTT-BCD541TDRD16A
Chromosome 5
Chromosome location 5q13.2
Summary This gene is part of a 500 kb inverted duplication on chromosome 5q13. This duplicated region contains at least four genes and repetitive elements which make it prone to rearrangements and deletions. The repetitiveness and complexity of the sequence have
miRNA miRNA information provided by mirtarbase database.
221
miRTarBase ID miRNA Experiments Reference
MIRT021810 hsa-miR-132-3p Microarray 17612493
MIRT028496 hsa-miR-30a-5p Proteomics 18668040
MIRT029454 hsa-miR-26b-5p Microarray 19088304
MIRT052963 hsa-miR-146a-5p AGS 22020746
MIRT053151 hsa-miR-21-5p Luciferase reporter assayWestern blot 23657402
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
JUN Repression 15550677
SRF Activation 15550677
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0000245 Process Spliceosomal complex assembly IMP 9845364
GO:0000245 Process Spliceosomal complex assembly NAS 9323129
GO:0000375 Process RNA splicing, via transesterification reactions IEA
GO:0000387 Process Spliceosomal snRNP assembly EXP 12067652
GO:0000387 Process Spliceosomal snRNP assembly IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600354 11117 ENSG00000172062
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    snRNP Assembly
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
16
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Kugelberg-Welander disease Likely pathogenic; Pathogenic rs1554066659, rs1554066397, rs2112814388, rs104893931, rs77804083, rs104893927, rs104893932, rs2532126489, rs2532099835, rs2532112594, rs2532126303, rs2532126565, rs1554082110, rs397514517, rs397514518
View all (4 more)
RCV000009736
RCV000009740
RCV000009743
RCV000009745
RCV000009747
View all (14 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Spinal muscular atrophy Pathogenic; Likely pathogenic rs2112806512, rs2112806309, rs2532151486, rs77969175, rs104893922, rs1554066397, rs104893927, rs2532152556, rs1554082383, rs1561503058, rs141760116, rs1217001154, rs1290417835 RCV002273076
RCV002273293
RCV002640730
RCV002642356
RCV002470706
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Spinal muscular atrophy, type II Pathogenic; Likely pathogenic rs1554066397, rs77804083, rs104893930, rs104893935, rs2532113034, rs2532112958, rs1561499713, rs1199331007, rs1554082110, rs1217001154, rs1561498701, rs77668214 RCV000009739
RCV000009746
RCV000009752
RCV000009755
RCV004576119
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Spinal muscular atrophy, type IV Pathogenic; Likely pathogenic rs1554082110, rs1217001154, rs77668214 RCV000496588
RCV005036113
RCV000009751
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
PROXIMAL SPINAL MUSCULAR ATROPHY TYPE 1 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PROXIMAL SPINAL MUSCULAR ATROPHY TYPE 2 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PROXIMAL SPINAL MUSCULAR ATROPHY TYPE 3 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PROXIMAL SPINAL MUSCULAR ATROPHY TYPE 4 Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Medulloblastoma Medulloblastoma BEFREE 24190638
★☆☆☆☆
Found in Text Mining only
Alpers Syndrome (disorder) Alpers Syndrome BEFREE 30522974
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 36764297 Associate
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 30347409
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 11835381, 16093455, 16931506, 18759352, 19922137, 20840067, 21708901, 22249462, 22274580, 22323753, 23022481, 23255347, 23477310, 24210254, 24803543
View all (9 more)
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis LHGDN 16931506
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 22274580, 22323753, 30786668, 33389754, 39506867 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic lateral sclerosis 1 Amyotrophic lateral sclerosis Pubtator 22187232 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis, Sporadic Lateral Sclerosis BEFREE 16931506, 22187232, 24630593
★☆☆☆☆
Found in Text Mining only
Amyotrophy, monomelic Monomelic Amyotrophy BEFREE 15642858, 17850955
★☆☆☆☆
Found in Text Mining only