Gene Gene information from NCBI Gene database.
Entrez ID 6605
Gene name SWI/SNF related BAF chromatin remodeling complex subunit E1
Gene symbol SMARCE1
Synonyms (NCBI Gene)
BAF57CSS5
Chromosome 17
Chromosome location 17q21.2
Summary The protein encoded by this gene is part of the large ATP-dependent chromatin remodeling complex SWI/SNF, which is required for transcriptional activation of genes normally repressed by chromatin. The encoded protein, either alone or when in the SWI/SNF c
SNPs SNP information provided by dbSNP.
19
SNP ID Visualize variation Clinical significance Consequence
rs201484943 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Synonymous variant, coding sequence variant
rs387906857 T>C,G Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs397509405 G>A Risk-factor Stop gained, coding sequence variant
rs397509406 A>G Risk-factor Splice donor variant
rs397509407 C>G,T Risk-factor, likely-pathogenic Stop gained, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
383
miRTarBase ID miRNA Experiments Reference
MIRT020807 hsa-miR-155-5p Proteomics 18668040
MIRT027099 hsa-miR-103a-3p Sequencing 20371350
MIRT029727 hsa-miR-26b-5p Microarray 19088304
MIRT047936 hsa-miR-30c-5p CLASH 23622248
MIRT043752 hsa-miR-328-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
55
GO ID Ontology Definition Evidence Reference
GO:0000228 Component Nuclear chromosome TAS 9435219
GO:0000776 Component Kinetochore NAS 11078522
GO:0000785 Component Chromatin HDA 16217013
GO:0000785 Component Chromatin NAS 12192000
GO:0003677 Function DNA binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603111 11109 ENSG00000073584
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q969G3
Protein name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 (BRG1-associated factor 57) (BAF57)
Protein function Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromati
PDB 6LTH , 6LTJ , 7CYU , 7VDV , 7Y8R
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00505 HMG_box 66 134 HMG (high mobility group) box Domain
Sequence
MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIP
KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYE
AEKIEYNESMKAYH
NSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPD
DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK
LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQ
EEREKEAAEQAERSQSSIVPEEEQAANKGEEKKDDENIPMETEETHLEETTESQQNGEEG
TSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATVEEPPTDPIPEDEKKE
Sequence length 411
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  ATP-dependent chromatin remodeling
Thermogenesis
Hepatocellular carcinoma
  RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Coffin-Siris syndrome 5 Pathogenic; Likely pathogenic rs797045990, rs387906857, rs1555605795, rs1426841589 RCV005600804
RCV000211089
RCV000023251
RCV000677665
RCV000824687
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial meningioma Likely pathogenic; Pathogenic rs2143988221, rs2143988635, rs2143997220, rs1251821702, rs2037146593, rs2143985266, rs2143996133, rs2143988272, rs2143986851, rs2144009190, rs2143997316, rs2143996366, rs2143988301, rs2508598549, rs2508598327
View all (19 more)
RCV001378606
RCV001378947
RCV001378840
RCV001381755
RCV002027877
View all (30 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hereditary cancer-predisposing syndrome Pathogenic; Likely pathogenic rs1251821702, rs2143996133, rs2143997316, rs2143996366, rs2508603762, rs2143988301, rs2508598549, rs2143986798, rs2508604717, rs2508597255, rs2508595907, rs2508604703, rs2508604668, rs1057518166, rs1555605752
View all (1 more)
RCV004037651
RCV005278974
RCV002324410
RCV002333702
RCV002323481
View all (11 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Medulloblastoma non-WNT/non-SHH group 3 Pathogenic rs2143997365 RCV006254278
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenoid Cystic Carcinoma Adenocarcinoma CTD_human_DG 23685749
★☆☆☆☆
Found in Text Mining only
Anaplastic astrocytoma Anaplastic Astrocytoma BEFREE 30499906
★☆☆☆☆
Found in Text Mining only
Angiomatous Meningioma Angiomatous Meningioma BEFREE 31589317
★☆☆☆☆
Found in Text Mining only
Arachnodactyly Arachnodactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune Diseases BEFREE 29978433
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 16135788, 16538531, 21465167, 27495308
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 16538531, 16769725, 18332872 Associate
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 16135788 Inhibit
★☆☆☆☆
Found in Text Mining only