Gene Gene information from NCBI Gene database.
Entrez ID 6598
Gene name SWI/SNF related BAF chromatin remodeling complex subunit B1
Gene symbol SMARCB1
Synonyms (NCBI Gene)
BAF47CSS3INI-1INI1MRD15PPP1R144RDTRTPS1SNF5SNF5L1SWNTS1Sfh1pSnr1hSNFS
Chromosome 22
Chromosome location 22q11.23|22q11
Summary The protein encoded by this gene is part of a complex that relieves repressive chromatin structures, allowing the transcriptional machinery to access its targets more effectively. The encoded nuclear protein may also bind to and enhance the DNA joining ac
SNPs SNP information provided by dbSNP.
32
SNP ID Visualize variation Clinical significance Consequence
rs74315513 C>T Pathogenic Stop gained, coding sequence variant
rs112038099 G>A,C Pathogenic Splice donor variant
rs121434496 C>T Pathogenic Coding sequence variant, stop gained
rs138184483 C>G,T Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs149451748 C>T Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
44
miRTarBase ID miRNA Experiments Reference
MIRT004861 hsa-miR-192-5p Luciferase reporter assayqRT-PCR 19074876
MIRT023864 hsa-miR-1-3p Proteomics 18668040
MIRT024448 hsa-miR-215-5p Microarray 19074876
MIRT004861 hsa-miR-192-5p Reporter assay;Microarray;Other 19074876
MIRT051937 hsa-let-7b-5p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
PARP1 Unknown 17616514
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
75
GO ID Ontology Definition Evidence Reference
GO:0000228 Component Nuclear chromosome IEA
GO:0000776 Component Kinetochore NAS 11078522
GO:0000785 Component Chromatin HDA 16217013
GO:0000785 Component Chromatin NAS 12192000
GO:0001164 Function RNA polymerase I core promoter sequence-specific DNA binding IMP 22368283
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601607 11103 ENSG00000099956
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q12824
Protein name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (BRG1-associated factor 47) (BAF47) (Integrase interactor 1 protein) (SNF5 homolog) (hSNF5)
Protein function Core component of the BAF (hSWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. The BAF complex is
PDB 5AJ1 , 5GJK , 5L7A , 5L7B , 6AX5 , 6KAG , 6KZ7 , 6LTH , 6LTJ , 6LZP , 6UCH , 7VDV , 7Y8R
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04855 SNF5 179 256 SNF5 / SMARCB1 / INI1 Family
PF04855 SNF5 249 373 SNF5 / SMARCB1 / INI1 Family
Sequence
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESY
PTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTR
RMRRLANTAPAW
Sequence length 385
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  ATP-dependent chromatin remodeling
Viral life cycle - HIV-1
Thermogenesis
Hepatocellular carcinoma
  RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
50
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Atypical teratoid rhabdoid tumor Pathogenic rs2146045204, rs1060503015, rs1555877286 RCV006254315
RCV006254061
RCV006254124
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Coffin-Siris syndrome Likely pathogenic; Pathogenic rs2146026614, rs878854600, rs1057517825, rs398122368, rs2030331202 RCV001806729
RCV005365185
RCV004798828
RCV004556052
RCV001269267
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Colon adenocarcinoma Likely pathogenic; Pathogenic rs1057517825 RCV005900669
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Embryonal rhabdomyosarcoma Likely pathogenic; Pathogenic rs1057517825 RCV006253943
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Adenoid cystic carcinoma - ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism spectrum disorder Likely benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
22q11 Deletion Syndrome 22q11 deletion syndrome Pubtator 21613800 Associate
★☆☆☆☆
Found in Text Mining only
Acoustic Neuroma Acoustic Neuroma BEFREE 22105938, 24740647, 28365909, 28737257
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 12684622
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 11104031
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 12684622
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 25007146, 27184481
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 24327545
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 27184481
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Endometrioid Endometrial Cancer BEFREE 25920939
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 11104031
★☆☆☆☆
Found in Text Mining only