Gene Gene information from NCBI Gene database.
Entrez ID 6578
Gene name Solute carrier organic anion transporter family member 2A1
Gene symbol SLCO2A1
Synonyms (NCBI Gene)
MATR1OATP2A1PGTPHOADPHOAR2SLC21A2
Chromosome 3
Chromosome location 3q22.1-q22.2
Summary This gene encodes a prostaglandin transporter that is a member of the 12-membrane-spanning superfamily of transporters. The encoded protein may be involved in mediating the uptake and clearance of prostaglandins in numerous tissues. [provided by RefSeq, D
SNPs SNP information provided by dbSNP.
14
SNP ID Visualize variation Clinical significance Consequence
rs387906806 C>T Pathogenic Missense variant, coding sequence variant
rs387907295 C>A Pathogenic Missense variant, coding sequence variant
rs387907296 T>A,C Pathogenic Missense variant, coding sequence variant, 5 prime UTR variant
rs387907297 C>A,T Pathogenic Missense variant, coding sequence variant, stop gained, 5 prime UTR variant
rs751192029 A>-,AA Pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
67
miRTarBase ID miRNA Experiments Reference
MIRT025150 hsa-miR-181a-5p Microarray 17612493
MIRT1369319 hsa-miR-1182 CLIP-seq
MIRT1369320 hsa-miR-1224-3p CLIP-seq
MIRT1369321 hsa-miR-1229 CLIP-seq
MIRT1369322 hsa-miR-1236 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0005319 Function Lipid transporter activity IEA
GO:0005319 Function Lipid transporter activity TAS 8787677
GO:0005737 Component Cytoplasm IEA
GO:0005764 Component Lysosome IEA
GO:0005886 Component Plasma membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601460 10955 ENSG00000174640
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92959
Protein name Solute carrier organic anion transporter family member 2A1 (SLCO2A1) (OATP2A1) (PHOAR2) (Prostaglandin transporter) (PGT) (Solute carrier family 21 member 2) (SLC21A2)
Protein function Mediates the transport of prostaglandins (PGs, mainly PGE2, PGE1, PGE3, PGF2alpha, PGD2, PGH2) and thromboxanes (thromboxane B2) across the cell membrane (PubMed:11997326, PubMed:26692285, PubMed:8787677). PGs and thromboxanes play fundamental r
PDB 3MRR , 8KGI , 8KGV , 8KGW
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03137 OATP 33 602 Organic Anion Transporter Polypeptide (OATP) family Family
PF07648 Kazal_2 445 494 Kazal-type serine protease inhibitor domain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous (PubMed:22331663, PubMed:8787677). Significant expression observed in lung, kidney, spleen, and heart (PubMed:22331663). Expressed in the endometrium (at both mRNA and protein levels) (PubMed:15657371, PubMed:16339169). Expr
Sequence
Sequence length 643
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Defective SLCO2A1 causes primary, autosomal recessive hypertrophic osteoarthropathy 2 (PHOAR2)
Transport of organic anions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
25
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cervical cancer Pathogenic rs774795340 RCV005900928
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hepatocellular carcinoma Pathogenic rs765249238 RCV005893890
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypertrophic osteoarthropathy, primary, autosomal dominant Pathogenic; Likely pathogenic rs2108043577, rs765824772, rs1177054873, rs776813259, rs774795340, rs387907297 RCV001527660
RCV001527662
RCV001527665
RCV001527663
RCV001527659
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Hypertrophic osteoarthropathy, primary, autosomal recessive, 2 Pathogenic; Likely pathogenic rs2108043577, rs778081416, rs1177054873, rs2108035368, rs765698717, rs2108045784, rs2108045848, rs200316980, rs387907297, rs1576444504, rs768030732, rs758054913, rs776813259, rs1085307096, rs765249238
View all (25 more)
RCV003642961
RCV001527664
RCV001527666
RCV001527667
RCV001533517
View all (38 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Adrenocortical carcinoma, hereditary Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, BASAL CELL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acne Acne HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer GWASCAT_DG 29471430, 30510241, 30529582
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 23033009
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma GWASCAT_DG 30510241
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 29185482
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 18353443 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 29313109, 33328413, 33852188, 35611666 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic Dissection Aortic dissection Pubtator 36818541 Associate
★☆☆☆☆
Found in Text Mining only
Arthralgia Arthralgia Pubtator 33852188, 37226222 Associate
★☆☆☆☆
Found in Text Mining only