Gene Gene information from NCBI Gene database.
Entrez ID 6576
Gene name Solute carrier family 25 member 1
Gene symbol SLC25A1
Synonyms (NCBI Gene)
CICCMS23CTPD2L2ADSEASLC20A3
Chromosome 22
Chromosome location 22q11.21
Summary This gene encodes a member of the mitochondrial carrier subfamily of solute carrier proteins. Members of this family include nuclear-encoded transporters that translocate small metabolites across the mitochondrial membrane. This protein regulates the move
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs368647424 C>T Pathogenic Coding sequence variant, intron variant, missense variant
rs431905509 G>A,C Pathogenic, likely-pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs431905510 C>G,T Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs483352910 G>A Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs483352911 TTGTTCCCGC>- Pathogenic, likely-pathogenic Non coding transcript variant, frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
296
miRTarBase ID miRNA Experiments Reference
MIRT001333 hsa-miR-1-3p pSILAC 18668040
MIRT018228 hsa-miR-335-5p Microarray 18185580
MIRT001333 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT001333 hsa-miR-1-3p Proteomics 18668040
MIRT001593 hsa-let-7b-5p Proteomics 18668040
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
20
GO ID Ontology Definition Evidence Reference
GO:0005634 Component Nucleus HDA 21630459
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IBA
GO:0005739 Component Mitochondrion IEA
GO:0005743 Component Mitochondrial inner membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
190315 10979 ENSG00000100075
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P53007
Protein name Tricarboxylate transport protein, mitochondrial (Citrate transport protein) (CTP) (Mitochondrial citrate carrier) (CIC) (Solute carrier family 25 member 1) (Tricarboxylate carrier protein)
Protein function Mitochondrial electroneutral antiporter that exports citrate from the mitochondria into the cytosol in exchange for malate (PubMed:26870663, PubMed:29031613, PubMed:29238895, PubMed:39881208). Also able to mediate the exchange of citrate for iso
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00153 Mito_carr 21 116 Mitochondrial carrier protein Family
PF00153 Mito_carr 117 213 Mitochondrial carrier protein Family
PF00153 Mito_carr 216 308 Mitochondrial carrier protein Family
Sequence
Sequence length 311
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Gluconeogenesis
Fatty acyl-CoA biosynthesis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
2-hydroxyglutaric aciduria Likely pathogenic; Pathogenic rs781925968, rs431905509, rs483352911, rs781974501 RCV001706807
RCV000035018
RCV000035022
RCV000850394
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
D,L-2-hydroxyglutaric aciduria Likely pathogenic; Pathogenic rs431905509, rs431905510, rs483352910, rs483352911 RCV001801241
RCV001801242
RCV001801243
RCV001801245
RCV001801246
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Melanoma Likely pathogenic rs483352910 RCV005888967
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Myasthenic syndrome, congenital, 23, presynaptic Likely pathogenic; Pathogenic rs2517258643, rs2517258834, rs781908532, rs781974501 RCV003988787
RCV003990343
RCV000722131
RCV004813144
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COMBINED D-2- AND L-2-HYDROXYGLUTARIC ACIDURIA HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COMBINED D-2-HYDROXYGLUTARIC ACIDURIA AND L-2-HYDROXYGLUTARIC ACIDURIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGEN MYASTHENIC SYNDROMES PRESYNAPTIC Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 2473850
★☆☆☆☆
Found in Text Mining only
Acute Megakaryocytic Leukemias Megakaryocytic Leukemia BEFREE 15687366
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 30115754
★☆☆☆☆
Found in Text Mining only
Adrenocortical carcinoma Adrenocortical carcinoma BEFREE 10700725
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum BEFREE 23393310
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
alpha Thalassemia Alpha thalassemia Pubtator 31793705, 31906886, 34247821, 34511175, 34766575, 34782049, 35945425, 36099017 Associate
★☆☆☆☆
Found in Text Mining only
alpha-Thalassemia alpha Thalassemia BEFREE 1520607, 16042697, 16986175, 1733825, 17489847, 18710411, 21964516, 25118159, 25816038, 27241645, 2762043, 27891555, 28592815, 7901477, 9028451
View all (1 more)
★☆☆☆☆
Found in Text Mining only
alpha^+^ Thalassemia alpha Thalassemia BEFREE 1520607, 16042697, 16986175, 1733825, 17489847, 18710411, 21964516, 25086282, 25118159, 25816038, 27241645, 2762043, 27891555, 28592815, 7515267
View all (3 more)
★☆☆☆☆
Found in Text Mining only