Gene Gene information from NCBI Gene database.
Entrez ID 6573
Gene name Solute carrier family 19 member 1
Gene symbol SLC19A1
Synonyms (NCBI Gene)
CHMDFOLTIFC-1IFC1IMD114MEGAFREFCRFCRFC1RFT-1hRFChSLC19A1
Chromosome 21
Chromosome location 21q22.3
Summary The membrane protein encoded by this gene is a transporter of folate and is involved in the regulation of intracellular concentrations of folate. Three transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Mar
miRNA miRNA information provided by mirtarbase database.
127
miRTarBase ID miRNA Experiments Reference
MIRT051284 hsa-miR-16-5p CLASH 23622248
MIRT048799 hsa-miR-93-5p CLASH 23622248
MIRT045982 hsa-miR-125b-5p CLASH 23622248
MIRT042257 hsa-miR-484 CLASH 23622248
MIRT626471 hsa-miR-548e-5p HITS-CLIP 23824327
Transcription factors Transcription factors information provided by TRRUST V2 database.
7
Transcription factor Regulation Reference
CEBPB Activation 15652157
CREB1 Unknown 11078737
JUN Unknown 11078737
SP1 Activation 15652157
TFAP2A Activation 12228234
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
62
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183
GO:0005542 Function Folic acid binding IBA
GO:0005542 Function Folic acid binding IEA
GO:0005886 Component Plasma membrane IBA
GO:0005886 Component Plasma membrane IDA 23137377, 28112518
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600424 10937 ENSG00000173638
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P41440
Protein name Reduced folate transporter (FOLT) (Cyclic dinucleotide:anion antiporter SLC19A1) (Folate:anion antiporter SLC19A1) (Intestinal folate carrier 1) (IFC-1) (Placental folate transporter) (Reduced folate carrier protein) (RFC) (hRFC) (Reduced folate transport
Protein function Antiporter that mediates the import of reduced folates or a subset of cyclic dinucleotides, driven by the export of organic anions (PubMed:10787414, PubMed:15337749, PubMed:16115875, PubMed:22554803, PubMed:31126740, PubMed:31511694, PubMed:3227
PDB 7TX6 , 7TX7 , 7XPZ , 7XQ0 , 7XQ1 , 7XQ2 , 7XTK , 8DEP , 8GOE , 8GOF , 8HII , 8HIJ , 8HIK , 9JOZ , 9JRI , 9JRK , 9JRL , 9JRM , 9JRN
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01770 Folate_carrier 23 434 Reduced folate carrier Family
Tissue specificity TISSUE SPECIFICITY: Placenta, liver, and to a much smaller extent, in lung. {ECO:0000269|PubMed:7826387}.
Sequence
Sequence length 591
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Antifolate resistance
Vitamin digestion and absorption
Folate transport and metabolism
  Metabolism of folate and pterines
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
44
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Immunodeficiency 114, folate-responsive Pathogenic rs2077855956 RCV003444103
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CATARACT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute leukemia Leukemia BEFREE 31452789
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 15630450, 16462575, 18385010, 19020309, 19775302, 20824655, 21509569, 21657963, 22838948, 22914600, 23986219, 24927955, 29345051, 31499477, 9748136
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 22729036
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma CTD_human_DG 27602772
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma CTD_human_DG 16963246
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 21274745
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 21274745
★☆☆☆☆
Found in Text Mining only
Adenoma, Basal Cell Adenoma CTD_human_DG 16963246
★☆☆☆☆
Found in Text Mining only
Adenoma, Microcystic Adenoma CTD_human_DG 16963246
★☆☆☆☆
Found in Text Mining only
Adenoma, Monomorphic Adenoma CTD_human_DG 16963246
★☆☆☆☆
Found in Text Mining only