Gene Gene information from NCBI Gene database.
Entrez ID 657
Gene name Bone morphogenetic protein receptor type 1A
Gene symbol BMPR1A
Synonyms (NCBI Gene)
10q23delACVRLK3ALK-3ALK3BMPR-1ACD292SKR5
Chromosome 10
Chromosome location 10q23.2
Summary The bone morphogenetic protein (BMP) receptors are a family of transmembrane serine/threonine kinases that include the type I receptors BMPR1A and BMPR1B and the type II receptor BMPR2. These receptors are also closely related to the activin receptors, AC
SNPs SNP information provided by dbSNP.
144
SNP ID Visualize variation Clinical significance Consequence
rs35619497 C>T Conflicting-interpretations-of-pathogenicity, benign-likely-benign, likely-benign Missense variant, coding sequence variant
rs55932635 G>A,C Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs112883778 T>A,C Likely-pathogenic, uncertain-significance Missense variant, coding sequence variant
rs113849804 G>A,T Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs140592056 G>A Benign-likely-benign, conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
528
miRTarBase ID miRNA Experiments Reference
MIRT022438 hsa-miR-124-3p Microarray 18668037
MIRT037861 hsa-miR-455-3p CLASH 23622248
MIRT538936 hsa-miR-1277-5p HITS-CLIP 21572407
MIRT541914 hsa-miR-511-3p HITS-CLIP 21572407
MIRT538939 hsa-miR-223-5p HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
163
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001525 Process Angiogenesis IMP 24882581
GO:0001649 Process Osteoblast differentiation IEA
GO:0001701 Process In utero embryonic development IEA
GO:0001707 Process Mesoderm formation IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601299 1076 ENSG00000107779
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P36894
Protein name Bone morphogenetic protein receptor type-1A (BMP type-1A receptor) (BMPR-1A) (EC 2.7.11.30) (Activin receptor-like kinase 3) (ALK-3) (Serine/threonine-protein kinase receptor R5) (SKR5) (CD antigen CD292)
Protein function On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases. Type II receptors phosphorylate and activate type I receptors which autophosphorylate, then bind and activate SMAD trans
PDB 1ES7 , 1REW , 2GOO , 2H62 , 2H64 , 2K3G , 2QJ9 , 2QJA , 2QJB , 3NH7 , 3QB4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01064 Activin_recp 59 134 Activin types I and II receptor domain Domain
PF08515 TGF_beta_GS 205 232 Transforming growth factor beta type I GS-motif Family
PF07714 PK_Tyr_Ser-Thr 234 521 Protein tyrosine and serine/threonine kinase Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in skeletal muscle.
Sequence
Sequence length 532
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cytokine-cytokine receptor interaction
Hormone signaling
TGF-beta signaling pathway
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Fluid shear stress and atherosclerosis
  Signaling by BMP
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
40
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
BMPR1A-Related Polyposis Syndrome Pathogenic rs587782682 RCV005250019
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cervical cancer Likely pathogenic rs1564715427 RCV005901633
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Colorectal cancer Likely pathogenic rs2539351347 RCV005937407
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Generalized juvenile polyposis/juvenile polyposis coli Likely pathogenic; Pathogenic rs587782494, rs587782682, rs587783038, rs764466442, rs786202611, rs786204187, rs878854673, rs1131691181, rs1554886816, rs1554888970, rs1564673999, rs1564714834, rs1589763343, rs1589763393, rs771910503
View all (2 more)
RCV005600736
RCV000475579
RCV000144578
RCV000461272
RCV000463942
View all (12 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Aplasia/Hypoplasia involving the metacarpal bones Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aplasia/Hypoplasia of the phalanges of the hand Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
B lymphoblastic leukemia lymphoma with t(12;21)(p13;q22); TEL-AML1 (ETV6-RUNX1) Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BMPR1A-related disorder Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of colon Adenocarcinoma Of Colon HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of duodenum Adenocarcinoma Of Duodenum HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 19773747, 27696107
★☆☆☆☆
Found in Text Mining only
Agnosia Agnosia HPO_DG
★☆☆☆☆
Found in Text Mining only
Androgen Insensitivity Syndrome Androgen insensitivity syndrome Pubtator 20971460 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Ankylosing spondylitis Ankylosing Spondylitis BEFREE 31827527
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only