Gene Gene information from NCBI Gene database.
Entrez ID 6531
Gene name Solute carrier family 6 member 3
Gene symbol SLC6A3
Synonyms (NCBI Gene)
DATDAT1PKDYSPKDYS1
Chromosome 5
Chromosome location 5p15.33
Summary This gene encodes a dopamine transporter which is a member of the sodium- and chloride-dependent neurotransmitter transporter family. The 3` UTR of this gene contains a 40 bp tandem repeat, referred to as a variable number tandem repeat or VNTR, which can
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs71653633 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs186229286 G>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs267607068 A>T Pathogenic Missense variant, coding sequence variant
rs267607069 G>A Pathogenic Missense variant, coding sequence variant
rs431905504 C>T Pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
56
miRTarBase ID miRNA Experiments Reference
MIRT1366331 hsa-miR-1343 CLIP-seq
MIRT1366332 hsa-miR-19a CLIP-seq
MIRT1366333 hsa-miR-19b CLIP-seq
MIRT1366334 hsa-miR-2110 CLIP-seq
MIRT1366335 hsa-miR-3074-5p CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
NR4A2 Unknown 19494806
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
74
GO ID Ontology Definition Evidence Reference
GO:0001504 Process Neurotransmitter uptake IEA
GO:0002020 Function Protease binding IEA
GO:0005102 Function Signaling receptor binding IEA
GO:0005326 Function Neurotransmitter transmembrane transporter activity IEA
GO:0005326 Function Neurotransmitter transmembrane transporter activity ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
126455 11049 ENSG00000142319
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q01959
Protein name Sodium-dependent dopamine transporter (DA transporter) (DAT) (Solute carrier family 6 member 3)
Protein function Mediates sodium- and chloride-dependent transport of dopamine (PubMed:10375632, PubMed:11093780, PubMed:1406597, PubMed:15505207, PubMed:19478460, PubMed:39112701, PubMed:39112703, PubMed:39112705, PubMed:8302271). Also mediates sodium- and chlo
PDB 8VBY , 8Y2C , 8Y2D , 8Y2E , 8Y2F , 8Y2G , 9EO4
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00209 SNF 60 583 Sodium:neurotransmitter symporter family Family
Tissue specificity TISSUE SPECIFICITY: Highly expressed in substantia nigra (PubMed:7637582). Expressed in axonal varicosities in dopaminergic nerve terminals (at protein level) (PubMed:17296554). Expressed in the striatum (at protein level) (PubMed:17296554). {ECO:0000269|
Sequence
Sequence length 620
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Synaptic vesicle cycle
Dopaminergic synapse
Parkinson disease
Pathways of neurodegeneration - multiple diseases
Cocaine addiction
Amphetamine addiction
Alcoholism
  Dopamine clearance from the synaptic cleft
Na+/Cl- dependent neurotransmitter transporters
Defective SLC6A3 causes Parkinsonism-dystonia infantile (PKDYS)
Defective SLC6A3 causes Parkinsonism-dystonia infantile (PKDYS)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
45
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Classic dopamine transporter deficiency syndrome Likely pathogenic; Pathogenic rs431905514, rs431905515, rs2477328134, rs267607068, rs267607069, rs431905504, rs1756068240 RCV000083262
RCV000083263
RCV003223526
RCV000018249
RCV000018250
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Parkinsonism-dystonia, infantile Likely pathogenic; Pathogenic rs431905514, rs2126324037, rs2126353885, rs431905504, rs1756409749 RCV002228329
RCV002036710
RCV002927690
RCV003593863
RCV001208955
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMPHETAMINE OR RELATED ACTING SYMPATHOMIMETIC ABUSE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMPHETAMINE-RELATED DISORDERS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANHEDONIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 16865260
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 30026780
★☆☆☆☆
Found in Text Mining only
Age-Related Memory Disorders Age-Related Memory Disorders CTD_human_DG 17992686
★☆☆☆☆
Found in Text Mining only
Akinesia Akinesia BEFREE 29863572
★☆☆☆☆
Found in Text Mining only
Alagille Syndrome Alagille Syndrome BEFREE 12513948, 15193761, 15996968, 19249388, 21554332
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 21743130, 25496873, 33522999, 37948982, 39610284 Associate
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 32675415 Stimulate
★☆☆☆☆
Found in Text Mining only
Ameloblastoma Ameloblastoma Pubtator 37628576 Associate
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 31243072
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis, Familial Amyotrophic lateral sclerosis BEFREE 15538967
★☆☆☆☆
Found in Text Mining only