Gene Gene information from NCBI Gene database.
Entrez ID 6530
Gene name Solute carrier family 6 member 2
Gene symbol SLC6A2
Synonyms (NCBI Gene)
NAT1NETNET1SLC6A5
Chromosome 16
Chromosome location 16q12.2
Summary This gene encodes a member of the sodium:neurotransmitter symporter family. This member is a multi-pass membrane protein, which is responsible for reuptake of norepinephrine into presynaptic nerve terminals and is a regulator of norepinephrine homeostasis
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs121918126 G>A,C,T Pathogenic Non coding transcript variant, missense variant, coding sequence variant, 3 prime UTR variant
miRNA miRNA information provided by mirtarbase database.
48
miRTarBase ID miRNA Experiments Reference
MIRT1366302 hsa-miR-1321 CLIP-seq
MIRT1366303 hsa-miR-150 CLIP-seq
MIRT1366304 hsa-miR-19a CLIP-seq
MIRT1366305 hsa-miR-19b CLIP-seq
MIRT1366306 hsa-miR-3665 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
53
GO ID Ontology Definition Evidence Reference
GO:0003779 Function Actin binding IPI 18331289
GO:0005326 Function Neurotransmitter transmembrane transporter activity IEA
GO:0005326 Function Neurotransmitter transmembrane transporter activity ISS
GO:0005328 Function Neurotransmitter:sodium symporter activity IEA
GO:0005330 Function Dopamine:sodium symporter activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
163970 11048 ENSG00000103546
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P23975
Protein name Sodium-dependent noradrenaline transporter (Norepinephrine transporter) (NET) (Solute carrier family 6 member 2)
Protein function Mediates sodium- and chloride-dependent transport of norepinephrine (also known as noradrenaline), the primary signaling neurotransmitter in the autonomic sympathetic nervous system (PubMed:2008212, PubMed:8125921, PubMed:38750358). Is responsib
PDB 8HFE , 8HFF , 8HFG , 8HFI , 8HFL , 8I3V , 8WGR , 8WGX , 8WTU , 8WTV , 8WTW , 8WTX , 8WTY , 8XB2 , 8XB3 , 8XB4 , 8Y8Z , 8Y90 , 8Y91 , 8Y92 , 8Y93 , 8Y94 , 8Y95 , 8YR2 , 8Z1L , 8ZOY , 8ZP1 , 8ZP2 , 8ZPB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00209 SNF 56 580 Sodium:neurotransmitter symporter family Family
Sequence
Sequence length 617
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Synaptic vesicle cycle   Na+/Cl- dependent neurotransmitter transporters
Defective SLC6A2 causes orthostatic intolerance (OI)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Neurocirculatory asthenia Pathogenic rs121918126 RCV000015043
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BIPOLAR DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIAC EMBOLISM GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOEMBOLIC STROKE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DEPRESSIVE DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute pancreatitis Pancreatitis BEFREE 31593553
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma, Endometrioid Endometrial Cancer BEFREE 29237910
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 28024920
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 21335363, 22407736, 27811202, 30026780, 31330766
★☆☆☆☆
Found in Text Mining only
Agoraphobia Agoraphobia LHGDN 15722184
★☆☆☆☆
Found in Text Mining only
Anorexia Nervosa Anorexia BEFREE 12140790, 12784104, 14508509
★☆☆☆☆
Found in Text Mining only
Anorexia Nervosa Anorexia LHGDN 12140790
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 18629431
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety disorder Pubtator 26212818, 30341278 Associate
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 18629431, 28188993
★☆☆☆☆
Found in Text Mining only