Gene Gene information from NCBI Gene database.
Entrez ID 6528
Gene name Solute carrier family 5 member 5
Gene symbol SLC5A5
Synonyms (NCBI Gene)
NISTDH1
Chromosome 19
Chromosome location 19p13.11
Summary This gene encodes a member of the sodium glucose cotransporter family. The encoded protein is responsible for the uptake of iodine in tissues such as the thyroid and lactating breast tissue. The iodine taken up by the thyroid is incorporated into the meta
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs121909174 A>C Pathogenic Coding sequence variant, missense variant
rs121909175 C>A Pathogenic Coding sequence variant, stop gained
rs121909176 C>G Pathogenic Coding sequence variant, missense variant
rs121909177 C>G,T Pathogenic Synonymous variant, coding sequence variant, stop gained
rs121909178 G>A,C Pathogenic Coding sequence variant, genic upstream transcript variant, missense variant, upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
248
miRTarBase ID miRNA Experiments Reference
MIRT032088 hsa-let-7f-5p qRT-PCR 19956384
MIRT686052 hsa-miR-548c-3p HITS-CLIP 23313552
MIRT686051 hsa-miR-6732-3p HITS-CLIP 23313552
MIRT686050 hsa-miR-10a-5p HITS-CLIP 23313552
MIRT686049 hsa-miR-10b-5p HITS-CLIP 23313552
Transcription factors Transcription factors information provided by TRRUST V2 database.
6
Transcription factor Regulation Reference
APEX1 Activation 14630715
CREM Activation 18202121
CREM Repression 22510021
HHEX Activation 16854221
PAX8 Activation 14630715;17614769
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
51
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183
GO:0005634 Component Nucleus IDA 15961562
GO:0005737 Component Cytoplasm IDA 18372236
GO:0005737 Component Cytoplasm IEA
GO:0005886 Component Plasma membrane IC 21988488, 26831514
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601843 11040 ENSG00000105641
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92911
Protein name Sodium/iodide cotransporter (Na(+)/I(-) cotransporter) (Natrium iodide transporter) (Sodium-iodide symporter) (Na(+)/I(-) symporter) (Solute carrier family 5 member 5)
Protein function Sodium:iodide symporter that mediates the transport of iodide into the thyroid gland (PubMed:12488351, PubMed:18372236, PubMed:18708479, PubMed:20797386, PubMed:31310151, PubMed:32084174, PubMed:8806637, PubMed:9329364). Can also mediate the tra
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00474 SSF 47 452 Sodium:solute symporter family Family
Tissue specificity TISSUE SPECIFICITY: Expression is primarily in thyroid tissue, but also to a lower extent in mammary gland and ovary. Expression is reduced in tumors. {ECO:0000269|PubMed:8806637, ECO:0000269|PubMed:9329364}.
Sequence
Sequence length 643
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Thyroid hormone synthesis   Thyroxine biosynthesis
Organic anion transporters
Defective SLC5A5 causes thyroid dyshormonogenesis 1 (TDH1)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital hypothyroidism Likely pathogenic; Pathogenic rs121909180 RCV001270338
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
SLC5A5-related disorder Pathogenic; Likely pathogenic rs121909177, rs2514611674 RCV003398464
RCV003400066
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Thyroid dyshormonogenesis 1 Pathogenic; Likely pathogenic rs121909174, rs121909175, rs121909176, rs121909177, rs121909178, rs121909179, rs121909180, rs371248346, rs2514611674, rs200597118, rs1568423738, rs2094311069, rs2094296642, rs2094326271 RCV000008103
RCV000008104
RCV000008105
RCV000008106
RCV000008107
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, HEPATOCELLULAR CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHOLANGIOCARCINOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 10932223
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 20683361
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 12704416, 12865321
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 10576759, 11788674, 12720543, 9865544
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 19569179
★☆☆☆☆
Found in Text Mining only
Adult Hepatocellular Carcinoma Liver carcinoma BEFREE 21587211, 23038026, 27458162, 30683895
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 23134812
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 31445300
★☆☆☆☆
Found in Text Mining only
Anaplasia Anaplasia BEFREE 16253762, 16990649
★☆☆☆☆
Found in Text Mining only
Anaplastic carcinoma Anaplastic Carcinoma BEFREE 12215558
★☆☆☆☆
Found in Text Mining only