Gene Gene information from NCBI Gene database.
Entrez ID 6523
Gene name Solute carrier family 5 member 1
Gene symbol SLC5A1
Synonyms (NCBI Gene)
D22S675NAGTSGLT-1SGLT1
Chromosome 22
Chromosome location 22q12.3
Summary This gene encodes a member of the sodium-dependent glucose transporter (SGLT) family. The encoded integral membrane protein is the primary mediator of dietary glucose and galactose uptake from the intestinal lumen. Mutations in this gene have been associa
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs121912668 G>A Pathogenic Missense variant, coding sequence variant, genic upstream transcript variant
rs121912669 A>G Pathogenic Missense variant, coding sequence variant, genic upstream transcript variant
rs201799893 G>A Pathogenic Coding sequence variant, genic downstream transcript variant, missense variant
rs774651252 G>A Likely-pathogenic Missense variant, coding sequence variant
rs779502629 C>T Pathogenic Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
110
miRTarBase ID miRNA Experiments Reference
MIRT018696 hsa-miR-335-5p Microarray 18185580
MIRT1365357 hsa-miR-1 CLIP-seq
MIRT1365358 hsa-miR-1299 CLIP-seq
MIRT1365359 hsa-miR-134 CLIP-seq
MIRT1365360 hsa-miR-206 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
GATA5 Unknown 18656622
PER1 Repression 22526585
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
55
GO ID Ontology Definition Evidence Reference
GO:0000017 Process Alpha-glucoside transport IDA 20980548
GO:0000017 Process Alpha-glucoside transport IMP 17130520
GO:0000017 Process Alpha-glucoside transport ISS
GO:0001951 Process Intestinal D-glucose absorption ISS
GO:0005354 Function Galactose transmembrane transporter activity ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
182380 11036 ENSG00000100170
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P13866
Protein name Sodium/glucose cotransporter 1 (Na(+)/glucose cotransporter 1) (High affinity sodium-glucose cotransporter) (Solute carrier family 5 member 1)
Protein function Electrogenic Na(+)-coupled sugar symporter that actively transports D-glucose or D-galactose at the plasma membrane, with a Na(+) to sugar coupling ratio of 2:1. Transporter activity is driven by a transmembrane Na(+) electrochemical gradient se
PDB 7SL8 , 7SLA , 7WMV , 7YNI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00474 SSF 58 492 Sodium:solute symporter family Family
Tissue specificity TISSUE SPECIFICITY: Expressed in intestine (PubMed:2490366). Expressed in endometrial cells (PubMed:28974690). {ECO:0000269|PubMed:2490366, ECO:0000269|PubMed:28974690}.
Sequence
Sequence length 664
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Carbohydrate digestion and absorption
Bile secretion
Mineral absorption
  Cellular hexose transport
Defective SLC5A1 causes congenital glucose/galactose malabsorption (GGM)
Intestinal hexose absorption
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
8
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital glucose-galactose malabsorption Likely pathogenic; Pathogenic rs2149487756, rs2149492476, rs2149496680, rs764766115, rs765502638, rs927157864, rs2517662048, rs2517673510, rs764819816, rs121912668, rs933026071, rs1203557575, rs200105615, rs774829996, rs2517677261
View all (8 more)
RCV001783772
RCV002028061
RCV001957397
RCV002018577
RCV001918499
View all (19 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
SLC5A1-related disorder Likely pathogenic; Pathogenic rs933026071, rs1203557575, rs1046576892, rs200401846, rs779502629 RCV003414526
RCV003391669
RCV003408416
RCV003403455
RCV003411931
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colorectal cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
GLYCOSURIA, RENAL Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
GOUT GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma LHGDN 18853313
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 28454747
★☆☆☆☆
Found in Text Mining only
Anorexia Anorexia BEFREE 28192456
★☆☆☆☆
Found in Text Mining only
Anorexia Anorexia Pubtator 28192456 Associate
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis Pubtator 30286918 Associate
★☆☆☆☆
Found in Text Mining only
Atrophy Atrophy Pubtator 9274472 Stimulate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 31199048
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 32377271 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Pancreatic Ductal Pancreatic ductal carcinoma Pubtator 35090421 Stimulate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 37304236 Associate
★☆☆☆☆
Found in Text Mining only