Gene Gene information from NCBI Gene database.
Entrez ID 6500
Gene name S-phase kinase associated protein 1
Gene symbol SKP1
Synonyms (NCBI Gene)
EMC19OCP-IIOCP2SKP1ATCEB1Lp19A
Chromosome 5
Chromosome location 5q31.1
Summary This gene encodes a component of SCF complexes, which are composed of this protein, cullin 1, a ring-box protein, and one member of the F-box family of proteins. This protein binds directly to the F-box motif found in F-box proteins. SCF complexes are inv
miRNA miRNA information provided by mirtarbase database.
501
miRTarBase ID miRNA Experiments Reference
MIRT038197 hsa-miR-151a-5p CLASH 23622248
MIRT035977 hsa-miR-1301-3p CLASH 23622248
MIRT529377 hsa-miR-548c-3p PAR-CLIP 21572407
MIRT529376 hsa-miR-4282 PAR-CLIP 21572407
MIRT529375 hsa-miR-5692a PAR-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
43
GO ID Ontology Definition Evidence Reference
GO:0000209 Process Protein polyubiquitination IDA 12820959
GO:0005515 Function Protein binding IPI 11099048, 11238952, 12504026, 12609982, 12813041, 14685242, 15070733, 16278047, 16376880, 16797541, 16880511, 16943429, 17098746, 17274640, 17290223, 17380122, 17389369, 17510365, 18203720, 18239684, 18660753, 18667692, 18818696, 18929646, 19159283, 19412162, 19615732, 19762597, 199
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IC 15145941
GO:0005634 Component Nucleus IDA 18929646, 21378169
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601434 10899 ENSG00000113558
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P63208
Protein name S-phase kinase-associated protein 1 (Cyclin-A/CDK2-associated protein p19) (p19A) (Organ of Corti protein 2) (OCP-2) (Organ of Corti protein II) (OCP-II) (RNA polymerase II elongation factor-like protein) (SIII) (Transcription elongation factor B polypept
Protein function Essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as an adapter
PDB 1FQV , 1FS1 , 1FS2 , 1LDK , 1P22 , 2ASS , 2AST , 2E31 , 2E32 , 2OVP , 2OVQ , 2OVR , 3L2O , 3WSO , 4I6J , 5IBK , 5JH5 , 5K35 , 5V4B , 5VZT , 5VZU , 5XYL , 6BVA , 6BYH , 6C16 , 6M90 , 6M91 , 6M92 , 6M93 , 6M94 , 6O60 , 6TTU , 6VCD , 6W66 , 6WCQ , 6WNX , 7B5L , 7B5M , 7B5R , 7T1Y , 7T1Z , 7Z8B , 7Z8T , 7Z8V , 7ZBW , 7ZBZ , 8BYA , 8BYL , 8CDJ , 8CDK , 8OR0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03931 Skp1_POZ 2 67 Skp1 family, tetramerisation domain Domain
PF01466 Skp1 113 160 Skp1 family, dimerisation domain Domain
Sequence
Sequence length 163
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Polycomb repressive complex
Cell cycle
Oocyte meiosis
Ubiquitin mediated proteolysis
Protein processing in endoplasmic reticulum
Wnt signaling pathway
TGF-beta signaling pathway
Circadian rhythm
Shigellosis
Salmonella infection
Human immunodeficiency virus 1 infection
Pathways in cancer
  Activation of NF-kappaB in B cells
Prolactin receptor signaling
SCF-beta-TrCP mediated degradation of Emi1
Vpu mediated degradation of CD4
SCF(Skp2)-mediated degradation of p27/p21
Degradation of beta-catenin by the destruction complex
Downstream TCR signaling
Regulation of PLK1 Activity at G2/M Transition
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Loss of Function of FBXW7 in Cancer and NOTCH1 Signaling
FCERI mediated NF-kB activation
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
Dectin-1 mediated noncanonical NF-kB signaling
CLEC7A (Dectin-1) signaling
Degradation of GLI1 by the proteasome
GLI3 is processed to GLI3R by the proteasome
NIK-->noncanonical NF-kB signaling
MAP3K8 (TPL2)-dependent MAPK1/3 activation
Orc1 removal from chromatin
Cyclin D associated events in G1
FBXL7 down-regulates AURKA during mitotic entry and in early mitosis
Regulation of RUNX2 expression and activity
Neddylation
Interleukin-1 signaling
Iron uptake and transport
Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
1
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Keratoconus 1 Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30728155
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 30809972
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 27251275 Associate
★☆☆☆☆
Found in Text Mining only
Brugada Syndrome (disorder) Brugada Syndrome BEFREE 29608225
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 9736735 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma of lung Lung carcinoma BEFREE 27835873
★☆☆☆☆
Found in Text Mining only
Chromosomal Instability Chromosomal instability Pubtator 33731859 Associate
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 34237211 Associate
★☆☆☆☆
Found in Text Mining only
Cutaneous Mastocytosis Cutaneous mastocytosis BEFREE 31677940
★☆☆☆☆
Found in Text Mining only
Endometrial Carcinoma Endometrial carcinoma BEFREE 24035998
★☆☆☆☆
Found in Text Mining only