Gene Gene information from NCBI Gene database.
Entrez ID 649
Gene name Bone morphogenetic protein 1
Gene symbol BMP1
Synonyms (NCBI Gene)
OI13PCOLCPCPPCP2TLD
Chromosome 8
Chromosome location 8p21.3
Summary This gene encodes a protein that is capable of inducing formation of cartilage in vivo. Although other bone morphogenetic proteins are members of the TGF-beta superfamily, this gene encodes a protein that is not closely related to other known growth facto
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs116360985 C>T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, intron variant, stop gained, coding sequence variant
rs318240762 G>C Pathogenic, not-provided Non coding transcript variant, missense variant, coding sequence variant
rs398122891 C>G Pathogenic Coding sequence variant, missense variant, non coding transcript variant
rs786205217 T>C Pathogenic Intron variant, non coding transcript variant, 3 prime UTR variant
rs786205218 G>C Pathogenic Non coding transcript variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
136
miRTarBase ID miRNA Experiments Reference
MIRT006060 hsa-miR-29b-3p ELISAGFP reporter assayqRT-PCR 21273536
MIRT006060 hsa-miR-29b-3p ELISAGFP reporter assayqRT-PCR 21273536
MIRT006060 hsa-miR-29b-3p ELISAGFP reporter assayqRT-PCR 21273536
MIRT006060 hsa-miR-29b-3p Luciferase reporter assayMicroarrayqRT-PCR 19956414
MIRT018244 hsa-miR-335-5p Microarray 18185580
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
38
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development NAS 7798260
GO:0001501 Process Skeletal system development TAS 3201241
GO:0001502 Process Cartilage condensation TAS 3201241
GO:0001503 Process Ossification IEA
GO:0004222 Function Metalloendopeptidase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
112264 1067 ENSG00000168487
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P13497
Protein name Bone morphogenetic protein 1 (BMP-1) (EC 3.4.24.19) (Mammalian tolloid protein) (mTld) (Procollagen C-proteinase) (PCP)
Protein function Metalloprotease that plays key roles in regulating the formation of the extracellular matrix (ECM) via processing of various precursor proteins into mature functional enzymes or structural proteins (PubMed:33206546). Thereby participates in seve
PDB 3EDG , 3EDH , 6BSL , 6BSM , 6BTN , 6BTO , 6BTP , 6BTQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01400 Astacin 128 321 Astacin (Peptidase family M12A) Domain
PF00431 CUB 322 431 CUB domain Domain
PF00431 CUB 435 544 CUB domain Domain
PF14670 FXa_inhibition 551 587 Domain
PF00431 CUB 591 700 CUB domain Domain
PF07645 EGF_CA 703 743 Calcium-binding EGF domain Domain
PF00431 CUB 747 856 CUB domain Domain
PF00431 CUB 860 973 CUB domain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous.
Sequence
MPGVARLPLLLGLLLLPRPGRPLDLADYTYDLAEEDDSEPLNYKDPCKAAAFLGDIALDE
EDLRAFQVQQAVDLRRHTARKSSIKAAVPGNTSTPSCQSTNGQPQRGACGRWRGRSRSRR
AATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTY
RPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVREN
IQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIG
QRTRLSKGDIAQARKLYKCPA
CGETLQDSTGNFSSPEYPNGYSAHMHCVWRISVTPGEKI
ILNFTSLDLYRSRLCWYDYVEVRDGFWRKAPLRGRFCGSKLPEPIVSTDSRLWVEFRSSS
NWVGKGFFAVY
EAICGGDVKKDYGHIQSPNYPDDYRPSKVCIWRIQVSEGFHVGLTFQSF
EIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSDGSINKAGF
AVNF
FKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACGGFLTKLNG
SITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDVCKYDFVEVRSGLTADSK
LHGKFCGSEKPEVITSQYNNMRVEFKSDNTVSKKGFKAHF
FSDKDECSKDNGGCQQDCVN
TFGSYECQCRSGFVLHDNKHDCK
EAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISST
PGHRVKLTFMEMDIESQPECAYDHLEVFDGRDAKAPVLGRFCGSKKPEPVLATGSRMFLR
FYSDNSVQRKGFQASH
ATECGGQVRADVKTKDLYSHAQFGDNNYPGGVDCEWVIVAEEGY
GVELVFQTFEVEEETDCGYDYMELFDGYDSTAPRLGRYCGSGPPEEVYSAGDSVLVKFHS
DDTITKKGFHLRY
TSTKFQDTLHSRK
Sequence length 986
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Degradation of the extracellular matrix
Collagen biosynthesis and modifying enzymes
Anchoring fibril formation
Crosslinking of collagen fibrils
HDL assembly
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
33
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the skeletal system Likely pathogenic; Pathogenic rs318240762 RCV001814013
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Osteogenesis imperfecta Pathogenic; Likely pathogenic rs1828459412, rs759100606, rs318240762 RCV005057553
RCV003155840
RCV004690432
RCV004689429
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Osteogenesis imperfecta type 13 Likely pathogenic; Pathogenic rs2131895772, rs2131855526, rs1828459412, rs786205217, rs786205218, rs786205219, rs786205220, rs759100606, rs770454056, rs398122891, rs318240762 RCV001619777
RCV002073405
RCV002073406
RCV000170453
RCV000170454
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASPHYXIA NEONATORUM GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BMP1-related disorder Likely benign; Benign; Uncertain significance; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 8700514
★☆☆☆☆
Found in Text Mining only
Adrenal Hyperplasia Congenital Congenital adrenal hyperplasia Pubtator 24380766 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 30906778
★☆☆☆☆
Found in Text Mining only
Anemia Sickle Cell Sickle cell anemia Pubtator 24263212 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Valve Calcification of Aortic valve disease Pubtator 21698246 Associate
★☆☆☆☆
Found in Text Mining only
Arteriovenous Malformations Arteriovenous malformations Pubtator 35393474, 36198763 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis Pubtator 14558086, 30320351 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Psoriatic Psoriatic arthritis Pubtator 33250156 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 16542506, 26215036 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma Pubtator 35731115 Associate
★☆☆☆☆
Found in Text Mining only